Published July 25, 2025 | Version 4
Dataset Open

AlphaFold3 Antibody and Nanobody Benchmarking Dataset (Updated)

Authors/Creators

  • 1. ROR icon Johns Hopkins University

Description

We include formatted crystal structures and AF3, Boltz-1, and Chai-1-predicted structures as PDB files. We also includes the meta-data of the dataset (PDB ID, heavy chain, light chain and antigen sequences).

Files

revised_Compiled_Benchmark_Data.zip

Files (308.7 MB)

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Additional details

Dates

Updated
2025-07-25
The dataset is updated to include predictions from Boltz-1 and Chai-1 models, as well as associated score files from all three models for use as an analysis dataset for scoring methods using outputted confidences.

Software

Repository URL
https://github.com/NooriFatima/AF3_AbNb_Benchmark
Programming language
Python