Snakemake Hands-on Tutorial

This tutorial provides a practical, step-by-step introduction to Snakemake, a workflow management system for reproducible and scalable data analysis. Designed for beginners, it covers key concepts such as rules, wildcards, input/output files, and configuration files. Participants learn how to write a basic Snakefile, manage dependencies, scale workflows, and use conda environments for reproducibility. The tutorial also includes exercises to reinforce understanding and prepare users to build their own bioinformatics pipelines.