Published July 24, 2025
| Version v1.1
Software
Open
Gut Analysis Toolbox
Creators
- Sorensen, Luke
- Saito, Ayame
- Poon, Sabrina
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Noe Han, Myat
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Hamnett, Ryan
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Neckel, Peter
- Humenick, Adam
- Mutunduwe, Keith
- Glennan, Christie
- Mahdavian, Narges
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JH Brookes, Simon
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M McQuade, Rachel
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PP Foong, Jaime
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Gómez-de-Mariscal, Estibaliz
- Muñoz Barrutia, Arrate
- Kaltschmidt, Julia A.
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King, Sebastian K.
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Haase, Robert
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Carbone, Simona
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A. Veldhuis, Nicholas
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P. Poole, Daniel
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Rajasekhar, Pradeep
Description
- Reverted to StarDist for neuron segmentation. Used this bugfix for stardist plugin issue.
protobuf-java-3.23.4.jaris being shipped as part of GAT update site. - Added StarDist models back and removed deepimageJ models for neuron segmentation
- Updated documentation website to use a stable Fiji download: https://gut-analysis-toolbox.gitbook.io/docs#installation-and-configuration
Full Changelog: https://github.com/pr4deepr/GutAnalysisToolbox/compare/v1.0...v1.1
Notes
If you use this software, please cite it as below.
Files
pr4deepr/GutAnalysisToolbox-v1.1.zip
Files
(233.2 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:b88bd9ce07fcc4b0a1f1aab8fb156311
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233.2 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/pr4deepr/GutAnalysisToolbox/tree/v1.1 (URL)
Software
- Repository URL
- https://github.com/pr4deepr/GutAnalysisToolbox