Published July 23, 2025 | Version v2

Abundance-Biased Codon Diversification prevents recombination in AAV production and ensures robust in vivo expression of functional FRET sensors

Description

This files contains the input files and results for the paper "Abundance-Biased Codon Diversification prevents recombination 
in AAV production and ensures robust in vivo expression of functional FRET sensors". 
Content of each individual file:
- ABCD.zip: input files and results for the codon diversification runs
- FRET_Zstacks.zip: Two-photon microscopy Z-stacks for the sensors FLIIP and cdFLIIP in the brain cortex of anaesthesized mice, dual channel intensiometric detection
- FRET_cells.zip: Two-photon microscopy time series for the sensors FLIIP and cdFLIIP in HEK cells, dual channel intensiometric detection
- FRET-FLIM_IVglucose: Two-photon microscopy time series for the sensors FLIIP and cdFLIIP in the brain cortex of anaesthesized mice,
  following glucose injection. Donor channel was acquired with FLIM, while acceptor channel was intensiometric.
- cdFLIIP_saline: Two-photon microscopy time series for the cdFLIIP in the brain cortex of anaesthesized mice,
  following saline injection. Donor channel was acquired with FLIM, while acceptor channel was intensiometric.
- FRET_cdATeamDA: Two-photon microscopy time series for the sensors cdATeamDA in HEK cells, dual channel intensiometric detection.
- NGS_analysysResults: Results of the analysis conducted on the NGS sequencing results for the constructs analyzed in the paper. The original files are not included due to their large size,
  but are available upon request from the authors.
- code: A copy of the code repositories used in the paper.
- sequences: DNA seqeuncing results.

More information is available upon reasonable request to the corresponding author.

Files

ABCD.zip

Files (11.3 GB)

Name Size
md5:c5f5333c088990bb5f5009d2b751d9af
372.2 MB Preview Download
md5:00379e3eac3aa4deb74f1f51ebc12813
2.2 GB Preview Download
md5:193c595a521cf4d0c0038846ec3cfbea
485.7 MB Preview Download
md5:a47c4a3793f9d04ce676608bc64bcf76
2.0 GB Preview Download
md5:af73ed657e0ffb6dceeed66a449c75e2
44.2 MB Preview Download
md5:483fc8820bd8ad9846a8a49fbea25451
225.8 MB Preview Download
md5:3366b8987adfe70d3f946edb109bad56
159.6 MB Preview Download
md5:cbec8e30b4d5b0a92491b02ebd691f0a
153.0 MB Preview Download
md5:2f013b72f3657a0e3f6d4aaeb790cfd0
1.7 kB Preview Download
md5:230e4b47f6463737d894a5e355096d71
5.6 GB Preview Download