Published October 14, 2016
| Version v0.3
Software
Open
LozRiviera/COMPASS_paper: Submission for Wellcome Open Research
Authors/Creators
- 1. Sleep and Circadian Neuroscience Institute (SCNi), Nuffield Department of Clinical Neurosciences, University of Oxford, Sir William Dunn School of Pathology, OMPI G, South Parks Road, OX1 3RE, UK
Description
Comprising:
- The programs to run on hardware
- The IPython/Jupyter notebooks,
- The PIR data, and the scoring of sleep from EEG data files at the time of publication
For the Wellcome Open Research article:
'COMPASS: Continuous Open Mouse Phenotyping of Activity and Sleep Status'
code = MIT licence
Data = CC0
1sensorPIRvsEEGdata.csv - PIR based actigraphy for mice to compare to EEG-scored sleep
EEG_4mice10sec.csv - Manually scored sleep from EEG files (.edf) from 10.5281/zenodo.160118
blandAltLandD.csv - paired estimates of sleep by PIR and EEG methods (sum of 4 mice over 1 day in 30min bins)
1monthPIRsleep.csv - 1 month of activity for for figure 4
24mice_activity_LD1week.csv - activity and sleep for 24 wt mice (for hierarchical clustering in figure 4)
24mice_sleep_LD1week.csv
Files
LozRiviera/COMPASS_paper-v0.3.zip
Files
(6.5 MB)
| Name | Size | Download all |
|---|---|---|
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md5:c1a0b3696a4cfab6d8c8f13246b6865d
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6.5 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/LozRiviera/COMPASS_paper/tree/v0.3 (URL)
- Is supplemented by
- 10.5281/zenodo.160344 (DOI)
- 10.5281/zenodo.160118 (DOI)