There is a newer version of the record available.

Published October 5, 2016 | Version v0.9.0
Software Open

arose/ngl v0.9.0

Authors/Creators

  • 1. UCSD, RCSB PDB
  • 2. Charité Berlin
  • 3. NCBI/NLM/NIH
  • 4. @Netflix

Description

Added
  • lazy representation parameter that only builds & updates the representation when visible
  • chainname based color scheme
  • BondHash class to quickly get atoms connected to an atom
  • SpatialHash class to quickly get neighboring atoms/points
  • XmlParser parameter to use the browser's DOMParser
  • attachment (top, middle, bottom; left, center, right) for LabelRepresentation/TextBuffer
  • border color and width for LabelRepresentation/TextBuffer
  • colored background rectangle for LabelRepresentation/TextBuffer
  • "offset" style rendering of double/triple bonds (@fredludlow)
  • PubchemDatasource to load cid as sdf, pubchem://16490
  • basic entity support (type, description, chain mapping; mmcif, mmtf)
  • entitytype, moleculetype, chainid, polymer color schemes
  • ShaderRegistry, DecompressorRegistry
  • box display for "axes" representation
Changed
  • ResidueindexColorMaker colorscale domain on a per chain basis
  • ChainindexColorMaker colorscale domain on a per model basis
  • Fixed, initial parameters for a Buffer not taken into account
  • ignore bonds that are defined multiple times in PDB parser
  • updated mmtf lib to v1.0
  • use npm as the build system
  • complete list of ion and saccharide group names
Removed
  • gulp as the build system

Files

arose/ngl-v0.9.0.zip

Files (257.5 MB)

Name Size Download all
md5:c2a0b022e63551d82255c33ce8582b40
257.5 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/arose/ngl/tree/v0.9.0 (URL)