Published July 5, 2025 | Version v1
Dataset Open

Bionano Irys Optical Genome Mapping data of Embleya australiensis MST-111070 isolate MST-111070v14

  • 1. ROR icon Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures
  • 2. Centre for Microbial Interactions, Norwich Research Park, Norwich NR4 7UG, United Kingdom
  • 3. ROR icon Earlham Institute
  • 4. Microbial Screening Technologies
  • 5. ROR icon John Innes Centre
  • 6. Danmarks Tekniske Universitet The Novo Nordisk Foundation Center for Biosustainability

Description

The "Strep_1_2015-12-11_13_14.tar.gz" file contains the full original package (made available to us by the technology provider and prior any further analysis) with the raw data of the optical mapping performed with Bionano Irys (Bionano Genomics, San Diego, USA) technology on genomic DNA of the actinomycete strain Embleya australiensis MST-111070 isolate MST-111070v14, that led to the publication of a high-quality genome assembly of this organism (https://doi.org/10.1101/2025.07.03.662523  and NCBI BioProject PRJNA1219506). As described in the methods section of the referred work: "Bacterial cells were prepared from a liquid culture following supplier’s instructions; DNA-extraction, labelling and data collection including processing of images to extract BNX files with molecules information, was commissioned to the Earlham Institute (Norwich Research Park, Norwich, NR4 7UZ, United Kingdom). We received BNX files with Bionano molecules information for a high-resolution map of the distribution of the recognition site for nickase Nt.BspQI (GCTCTTC)." The BNX files as well as the original images are provided in this package.

The file "NCBI_SUB14353019.zip" contains the final DNA sequence assembly submitted to NCBI, and includes the full assembly in FASTA format which can be used as refference for the Bionano data analysis. It is also included the genome assembly annotated by NCBI in Genbank format, and the .acc file with the allocated accesion numbers.

All these original raw data and DNA sequence assembly allow the reproduction of our analysis and test of our hypothesis and conclussions, with current software or other available in future.

Files

NCBI_SUB14353019.zip

Files (27.6 GB)

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Additional details

Related works

Is described by
Preprint: 10.1101/2025.07.03.662523 (DOI)

Funding

Biotechnology and Biological Sciences Research Council
Responsive Mode Grant BB/P021506/1
Biotechnology and Biological Sciences Research Council
Institute Strategic Programme Grant BBS/E/J/000PR9790
Biotechnology and Biological Sciences Research Council
Institute Strategic Programme Grant BB/X01097X/1

Dates

Created
2015-12-11
Bionano data package delivered by provider

References

  • Evidence supporting the first secondary chromosome in actinobacteria as a hallmark of the Embleya genus Juan Pablo Gomez-Escribano, Siobhan Dorai-Raj, David Baker, Ernest Lacey, Barrie Wilkinson, Thomas J. Booth bioRxiv 2025.07.03.662523; doi: https://doi.org/10.1101/2025.07.03.662523