Published July 8, 2025
| Version ImputationBeagle_development_v0.0.7
Software
Open
github.com/broadinstitute/warp/atac
Authors/Creators
Description
Processing for single-cell ATAC-seq data from the level of raw fastq reads. This is the first step of the multiome pipeline. ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) is a technique used in molecular biology to assess genome-wide chromatin accessibility. This pipeline processes 10x Genomics Multiome ATAC FASTQ files.
Files
github.com-broadinstitute-warp-atac_ImputationBeagle_development_v0.0.7.zip
Files
(20.5 kB)
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md5:8e630f6d8fde6aa8a69f526fddb4e5aa
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Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.15856920 (URL)
- https://dockstore.org/workflows/github.com/broadinstitute/warp/atac:ImputationBeagle_development_v0.0.7 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fwarp%2Fatac/versions/ImputationBeagle_development_v0.0.7/PLAIN-WDL/descriptor/atac.wdl (URL)