Published July 7, 2025 | Version v1
Dataset Open

Raw example data associated with the publication "Graphical and Interactive Spatial Proteomics Image Analysis Workflow"

Authors/Creators

  • 1. ROR icon University of Washington

Contributors

Contact person:

Researcher:

  • 1. ROR icon University of Washington
  • 2. ROR icon Fred Hutch Cancer Center

Description

This is the raw data associated with the paper "Graphical and Interactive Spatial Proteomics Image Analysis Workflow". A sample spatial image file (240508_VET_QCTMA2_A2_55p_Scan1.qptiff) containing tissue microarray (TMA) stained by high-plex immunohistochemistry data, the QuPath project folder and files for this image, a Jupyter Notebook file (BWBQuPathClustering.ipynb), and workflow data file outputs (test_image-cell-measurements.csv and leiden_clustering_export.csv) are provided in this dataset.

The software is available at https://github.com/BioDepot/SpatialProteomics. Additional information about this dataset is provided in the GitHub ReadMe.

Files

Bwb_SpatialProteomics_TMA_rawfiles.zip

Files (1.2 GB)

Name Size
md5:c9f7e07e6e023202a6471738addc87b9
1.2 GB Preview Download

Additional details

Related works

Is supplement to
https://github.com/BioDepot/SpatialProteomics (URL)

Funding

National Institutes of Health
Biomarkers for Optimizing Risk Prediction and Early Detection of Cancers of the Colon and Esophagus U2C-CA271902

Dates

Created
2024-05
TMA image file generated
Collected
2025-06
Workflow outputs for TMA file collected