Expression Data Processing, Histogram input generation and IGV Bash Script Generating Programs

Files and programs required to perform the following tasks, in relation to the Validated Splicing Mutation Beacon and validsplicemut.cytognomix.com website:

- Expression Data Processing (where downloaded microarray and RNAseq processing data from several sources) is processed. This involves programs which assign microarray probenames gene names based on microarray library files, average genes with multiple probes, and outputs a file which consists of a list of gene names and expression values averaged from normal tissue of a particular type.

- Histogram input generating programs, which read in the processed expression data files (described above) and outputs the number of genes which fit within certain bins (range of expression values).

- IGV bash script generating program which reads in the processed Veridical data set, filters for those which meet a certain criteria, and outputs a single bash script to be read by IGV to take a screenshot of each region of interest in the patient BAM file of interest

There are additional "READ ME" files for each Perl program within each repositories.