Relate input files

This repository contains files required to run Relate on human data.

• Ancestral genome
• Genome mask
• Recombination map

for genome builds hg37 and hg38.

These were originally downloaded from

hg37:
genome mask: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/supporting/accessible_genome_masks/
ancestral genome: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase1/analysis_results/supporting/ancestral_alignments/
recombination map: https://mathgen.stats.ox.ac.uk/impute/1000GP_Phase3.html

hg38:
genome mask: https://www.internationalgenome.org/announcements/genome-accessibility-masks/
ancestral genome: ftp://ftp.ensembl.org/pub/release-86/fasta/ancestral_alleles/
recombination map: https://bochet.gcc.biostat.washington.edu/beagle/genetic_maps/ and converted with R script provided

We also provide generic human-wide coalescence rates inferred on the 1000G dataset and SGDP dataset that can be used as priors in Relate.