Published July 3, 2025 | Version 2.6
Software Open

qbic-pipelines/rnadeseq: 2.6 - Tree Roots

Authors/Creators

  • 1. @qbicsoftware
  • 2. Boehringer Ingelheim
  • 3. Quantitative Biology Center (QBiC)

Description

2.6 - Tree Roots

Added

  • #267 Add EnhancedVolcano plots and export to output results
  • #275 Added workflow section to report with mermaid graph
  • #272 Add gene biotypes from gtf to DE_tables and volcano plots

Changed

  • #267 Export static and interactive plotly volcano plots
  • #268 Apply EnhancedVolcano color code to plotly volcano plots
  • #269 Put gprofiler manhattan plots in tabs
  • #275 Changed report headers, citations, links
  • #276 Adjusted text, fixed typos, --path_quote is deprecated
  • #277 Version bump to 2.6
  • #281 Prettify long contrast names in volcano plot titles
  • #282 Apply text suggestion changes from review #279

Fixed

  • #271 Fix colors in plotly volcano plots
  • #273 Fix duplicate row.names in pathway analysis and max dimensions error
  • #274 Fix colors volcano plotly, sample dist. heatmap sampleNames, header trim whitespaces
  • #278 Fix summary contrast names
  • #280 Fix thresholds and lines in volcano plots
  • #283 Fix test config inputs

Files

qbic-pipelines/rnadeseq-2.6.zip

Files (22.8 MB)

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md5:4e0374c1fbea910c57fe62fde7960db4
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Additional details

Related works

Is supplement to
Software: https://github.com/qbic-pipelines/rnadeseq/tree/2.6 (URL)

Software

Repository URL
https://github.com/qbic-pipelines/rnadeseq