vitabel v0.1.0

What's Changed

Breaking Changes

• Refactor find_CC_periods to return IntervalLabel by @sorlob in https://github.com/UniGrazMath/vitabel/pull/164
• Add auxiliary data structure DataSlice holding the output of Channel.get_data / Label.get_data by @behackl in https://github.com/UniGrazMath/vitabel/pull/184

New Features / Enhancements

• Add method for truncating Vitals, Channel, Label by @behackl in https://github.com/UniGrazMath/vitabel/pull/21
• Feature: plot IntervalLabel as filled background regions when they don't hold y-data by @behackl in https://github.com/UniGrazMath/vitabel/pull/28
• Fix typo in demo notebook by @sorlob in https://github.com/UniGrazMath/vitabel/pull/29
• Improve initialization of variable in demo notebook by @sorlob in https://github.com/UniGrazMath/vitabel/pull/30
• Make override for unit of ppg (via SpO2 %, Waveform) more robust by @behackl in https://github.com/UniGrazMath/vitabel/pull/37
• Update stylesheet.py for Bedmaster at CHOP by @grahamk1chop in https://github.com/UniGrazMath/vitabel/pull/44
• Add keyword argument for filtering labels by their type by @sorlob in https://github.com/UniGrazMath/vitabel/pull/34
• Use Rectangle from matplotlib to filter plotting keyword arguments of IntervalLabel by @sorlob in https://github.com/UniGrazMath/vitabel/pull/47
• fix #71: Add absolute time to data frame generated by _timeseries_list_info by @sorlob in https://github.com/UniGrazMath/vitabel/pull/83
• Reorder columns in info tables by @sorlob in https://github.com/UniGrazMath/vitabel/pull/90
• Let overview plots range over full range of plotted data by default; add limited_overview keyword argument by @sorlob in https://github.com/UniGrazMath/vitabel/pull/52
• Add typing and improve implementation, documentation of datatype argument by @sorlob in https://github.com/UniGrazMath/vitabel/pull/102
• Various improvements to CSV / data frame loading code by @behackl in https://github.com/UniGrazMath/vitabel/pull/104
• Feature: area under threshold calculations by @sorlob in https://github.com/UniGrazMath/vitabel/pull/77
• Add library version to exported data and check for version mismatch when loading by @behackl in https://github.com/UniGrazMath/vitabel/pull/106
• Fix and improve handling of time offset, allow directly setting offset attribute by @behackl in https://github.com/UniGrazMath/vitabel/pull/111
• Basic support: allow None / pandas.NaT / numpy.nan in time_index by @behackl in https://github.com/UniGrazMath/vitabel/pull/113
• Cleanup label string data refactor (continued) by @behackl in https://github.com/UniGrazMath/vitabel/pull/133
• Introduce text_data for Label and IntervalLabel by @sorlob in https://github.com/UniGrazMath/vitabel/pull/131
• Improve interface of to_csv method by @sorlob in https://github.com/UniGrazMath/vitabel/pull/143
• Minor improvements to automatic analysis methods by @sorlob in https://github.com/UniGrazMath/vitabel/pull/135
• Improve code for choosing automatic preset for plot settings by @sorlob in https://github.com/UniGrazMath/vitabel/pull/146
• Refactor dropdown menu by @sorlob in https://github.com/UniGrazMath/vitabel/pull/140
• Properly support text_data for IntervalLabel by @sorlob in https://github.com/UniGrazMath/vitabel/pull/137
• Add Label for etco2 by @sorlob in https://github.com/UniGrazMath/vitabel/pull/165
• Refactor input to area_under_threshold in form of new source argument by @sorlob in https://github.com/UniGrazMath/vitabel/pull/175
• Add selection for annotation preset for labels by @sorlob in https://github.com/UniGrazMath/vitabel/pull/177
• Include adjacent non-included data points when plotting to avoid plots breaking at the ends by @behackl in https://github.com/UniGrazMath/vitabel/pull/192
• Add first_entry and last_entry as properties of TimeSeriesBase by @sorlob in https://github.com/UniGrazMath/vitabel/pull/198
• Make sure local vitabel environment is installed for Binder environments by @sorlob in https://github.com/UniGrazMath/vitabel/pull/195
• Add visual feedback on adding partial IntervalLabel annotation by @sorlob in https://github.com/UniGrazMath/vitabel/pull/207
• Allow creating IntervalLabel by list of tuples of interval endpoints by @sorlob in https://github.com/UniGrazMath/vitabel/pull/202
• Add Vitals.detach_label_from_channel as dedicated way of using data container to manage label attachments by @behackl in https://github.com/UniGrazMath/vitabel/pull/178
• Add code used in case processing of German Resuscitation Registry by @sorlob in https://github.com/UniGrazMath/vitabel/pull/84
• Allow filtering channels by passing keyword arguments in more methods by @sorlob in https://github.com/UniGrazMath/vitabel/pull/209
• feature: Add rename method to Label for updating label names by @sorlob in https://github.com/UniGrazMath/vitabel/pull/212
• Refactor Vitals.add_vitaldb_recording by @sorlob in https://github.com/UniGrazMath/vitabel/pull/215
• Improve information displayed in info table by @sorlob in https://github.com/UniGrazMath/vitabel/pull/214
• Allow querying channels / labels by their index by @behackl in https://github.com/UniGrazMath/vitabel/pull/220
• Unify input arguments and checks for automatic analysis / computation methods by @behackl in https://github.com/UniGrazMath/vitabel/pull/219
• Improve loading routine for stryker devices to extract metadata by @sorlob in https://github.com/UniGrazMath/vitabel/pull/221
• Improve sorting of columns in info table by @sorlob in https://github.com/UniGrazMath/vitabel/pull/224
• Preparation of demo notebooks by @sorlob in https://github.com/UniGrazMath/vitabel/pull/144
• Add method for creating time-scaled time series by @behackl in https://github.com/UniGrazMath/vitabel/pull/227
• Add method for importing ventilatory feedback from EOlife export by @sorlob in https://github.com/UniGrazMath/vitabel/pull/103

Bugfixes

• Fix textual labels on (fixed) axis height by @behackl in https://github.com/UniGrazMath/vitabel/pull/25
• Improve robustness of loading ZOLL-json format by @behackl in https://github.com/UniGrazMath/vitabel/pull/42
• Use correct method for filtering labels in Vitals class by @sorlob in https://github.com/UniGrazMath/vitabel/pull/61
• Check if artist was generated before trying to set corresponding label by @sorlob in https://github.com/UniGrazMath/vitabel/pull/56
• Cast data time types to avoid UFuncTypeError by @sorlob in https://github.com/UniGrazMath/vitabel/pull/68
• Make Vitals.rec_start and Vitals.rec_stop more robust in case of no contained channels by @sorlob in https://github.com/UniGrazMath/vitabel/pull/74
• Handle timestamp addition type error by @sorlob in https://github.com/UniGrazMath/vitabel/pull/80
• Fix wrong get_labels call by @sorlob in https://github.com/UniGrazMath/vitabel/pull/86
• Fix wrong type call by @sorlob in https://github.com/UniGrazMath/vitabel/pull/87
• Improve time type detection in TimeSeriesBase class by @sorlob in https://github.com/UniGrazMath/vitabel/pull/82
• Check unique timestamps by @sorlob in https://github.com/UniGrazMath/vitabel/pull/94
• Improve handling of time_index containing np.NaT entries by @sorlob in https://github.com/UniGrazMath/vitabel/pull/109
• Fix behavior of warning about empty time range query in get_time_mask by @sorlob in https://github.com/UniGrazMath/vitabel/pull/122
• Fix IntervalLabel.from_dict by @sorlob in https://github.com/UniGrazMath/vitabel/pull/170
• Set plot legend only once for axvspan by @sorlob in https://github.com/UniGrazMath/vitabel/pull/166
• Make interactive plot checkbox menu population more robust by @behackl in https://github.com/UniGrazMath/vitabel/pull/180
• Fix repainting of overview indicators after changes to overview plot by @behackl in https://github.com/UniGrazMath/vitabel/pull/182
• Improve documentation and behavior of methods removing channels or labels by @behackl in https://github.com/UniGrazMath/vitabel/pull/183
• Fix: make sure shift marker is redrawn when interactive plot is repainted by @behackl in https://github.com/UniGrazMath/vitabel/pull/189
• Allow Vitals-import of pd.DataFrame with relative time index by @behackl in https://github.com/UniGrazMath/vitabel/pull/193
• Checked for empty channels before raising time type inconsistency error by @sorlob in https://github.com/UniGrazMath/vitabel/pull/200
• Improve robustness of (interactive) plotting when empty channels / labels are specified by @sorlob in https://github.com/UniGrazMath/vitabel/pull/204
• Removed downsampling happening during vitaldb import by @sorlob in https://github.com/UniGrazMath/vitabel/pull/226
• Recompute resolution based on current figure width when resizing canvas by @behackl in https://github.com/UniGrazMath/vitabel/pull/239

Documentation

• Setup basic API reference documentation by @behackl in https://github.com/UniGrazMath/vitabel/pull/14
• API doc improvements by @behackl in https://github.com/UniGrazMath/vitabel/pull/17
• Update README.md by @sorlob in https://github.com/UniGrazMath/vitabel/pull/40
• Improve docstrings of save_data, load_data by @sorlob in https://github.com/UniGrazMath/vitabel/pull/39
• Format DOIs as hyperlinks by @sorlob in https://github.com/UniGrazMath/vitabel/pull/59
• Updated docstring for get_label by @sorlob in https://github.com/UniGrazMath/vitabel/pull/66
• Improve documentation by creating various static pages and adding content to existing ones by @behackl in https://github.com/UniGrazMath/vitabel/pull/97
• Include demo notebooks as statically rendered subpages in documentation by @behackl in https://github.com/UniGrazMath/vitabel/pull/231
• Add proper bibliography in documentation by @behackl in https://github.com/UniGrazMath/vitabel/pull/232
• Extend bibliography, add reference to Zotero group by @sorlob in https://github.com/UniGrazMath/vitabel/pull/237
• Miscellaneous cleanup in bibliography by @sorlob in https://github.com/UniGrazMath/vitabel/pull/238

Miscellaneous

• Fix premature merge by @sorlob in https://github.com/UniGrazMath/vitabel/pull/148
• Add screenshots depicting timeline adjustment by @sorlob in https://github.com/UniGrazMath/vitabel/pull/229
• Improve timeline adjustment screenshots by @sorlob in https://github.com/UniGrazMath/vitabel/pull/230
• Prepare v0.1.0 by @behackl in https://github.com/UniGrazMath/vitabel/pull/228
• Remove output from demo notebook 3 by @sorlob in https://github.com/UniGrazMath/vitabel/pull/236

New Contributors

• @sorlob made their first contribution in https://github.com/UniGrazMath/vitabel/pull/29
• @grahamk1chop made their first contribution in https://github.com/UniGrazMath/vitabel/pull/44

Full Changelog: https://github.com/UniGrazMath/vitabel/compare/v0.0.1...v0.1.0

New Contributors

• @sorlob made their first contribution in https://github.com/UniGrazMath/vitabel/pull/29
• @grahamk1chop made their first contribution in https://github.com/UniGrazMath/vitabel/pull/44
• @JohannesUWittig made their first contribution in https://github.com/UniGrazMath/vitabel/pull/105

Full Changelog: https://github.com/UniGrazMath/vitabel/compare/v0.0.1...v0.1.0