Published June 27, 2025 | Version v1

Fungal frontiers in toxic terrain: Revealing culturable fungal communities in Serpentine paddy fields of Taiwan

  • 1. National Taiwan University, Taipei City, Taiwan
  • 2. University of California, Riverside, United States of America
  • 3. Chulalongkorn University, Bangkok, Thailand
  • 4. Helmholtz Centre for Infection Research GmbH (HZI), Braunschweig, Germany
  • 5. National Taiwan University, Taipei City, Taiwan|Chulalongkorn University, Bangkok, Thailand

Description

Serpentine soils are predominantly distributed along the Circum-Pacific margin and the Mediterranean, including eastern Taiwan. These soils are characterized by high levels of heavy metals, including nickel and chromium, and a low calcium-to-magnesium ratio, creating a unique environment that fosters microorganisms with specialized traits. In this study, culture-dependent isolation methods were used to elucidate the composition of culturable fungal communities in serpentine-characterized paddy fields in eastern Taiwan. A total of 154 fungal isolates were isolated from serpentine paddy fields in eastern Taiwan. These isolates were grouped into 79 strains based on colony morphology and were subsequently evaluated through morphological and multi-locus phylogenetic analyses. The results revealed that 60% of the strains belong to the class Dothideomycetes, followed by 21% in Sordariomycetes and 19% in Eurotiomycetes. At the genus level, Westerdykella was the dominant genus, presenting 35% of the total of isolated strains, followed by Pyrenochaetopsis (20%), Talaromyces (19%), and Pseudorhypophila (8%). The study reports 11 novel species: Cylindrotrichum formosanum sp. nov., Dimorphiseta formosana sp. nov., D. serpentinicola sp. nov., Parasarocladium formosum sp. nov., Phialoparvum formosanum sp. nov., Poaceascoma serpentinum sp. nov., Pseudorhypophila formosana sp. nov., Sarocladium formosanum sp. nov., S. serpentinicola sp. nov., Talaromyces taiwanensis sp. nov., and Westerdykella formosana sp. nov. Additionally, 11 known species are reported for the first time in Taiwan: Pseudothielavia terricola, Pseudoxylomyces aquaticus, Pyrenochaetopsis oryzicola, Py. paucisetosa, Setophaeosphaeria microspora, Talaromyces adpressus, T. thailandensis, Westerdykella aquatica, W. capitulum, W. dispersa, and W. globosa. In addition, this study presents the first documented asexual morph within the genus Poaceascoma, represented by P. serpentinum. These discoveries will be valuable for future evaluations of the potential uses and functions of these species as bioremediation agents.

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References

  • Absalan S, Armand A et al. (2024) Diversity of pleosporalean fungi isolated from rice (Oryza sativa L.) in Northern Thailand and descriptions of five new species. Journal of Fungi 10(11): 763. https://doi.org/10.3390/jof10110763
  • Aime MC, Miller AN et al. (2021) How to publish a new fungal species, or name, version 3.0. IMA Fungus 12: 1–68. https://doi.org/10.1186/s43008-021-00063-1
  • Airin AA, Arafat MI et al. (2023) Plant growth-promoting endophytic fungi of the wild halophytic rice Oryza coarctata. Annals of Microbiology 73(1): 36. https://doi.org/10.1186/s13213-023-01738-3
  • Alexander EB (2004) Serpentine soil redness, differences among peridotite and serpentinite materials, Klamath Mountains, California. International Geology Review 46(8): 754–764. https://doi.org/10.2747/0020-6814.46.8.754
  • Ali EH (2007) Comparative study of the effect of stress by the heavy metals Cd, Pb, and Zn on morphological characteristics of Saprolegnia delica Coker and Dictyuchus carpophorus Zopf. Polish Journal of Microbiology 56(4): 257–264.
  • Angelini P, Rubini A et al. (2012) The endophytic fungal communities associated with the leaves and roots of the common reed (Phragmites australis) in Lake Trasimeno (Perugia, Italy) in declining and healthy stands. Fungal Ecology 5(6): 683–693. https://doi.org/10.1016/j.funeco.2012.03.001
  • Anjos RM, Moreira SI et al. (2020) Sarocladium graminicola, a new endophytic species from tropical grasses. Mycological Progress 19(6): 605–614. https://doi.org/10.1007/s11557-020-01585-5
  • Arenal F, Platas G, Pelaez F (2007) A new endophytic species of Preussia (Sporormiaceae) inferred from morphological observations and molecular phylogenetic analysis. Fungal Diversity 25: 1–17.
  • Ariyawansa HA, Phillips AJ et al. (2018) Tzeananiaceae, a new pleosporalean family associated with Ophiocordyceps macroacicularis fruiting bodies in Taiwan. MycoKeys (37): 1–17. https://doi.org/10.3897/mycokeys.37.27265
  • Ariyawansa HA, Tsai I et al. (2020) Species diversity of pleosporalean taxa associated with Camellia sinensis (L.) Kuntze in Taiwan. Scientific Reports 10(1): 12762. https://doi.org/10.1038/s41598-020-69718-0
  • Benjamin CR (1955) Ascocarps of Aspergillus and Penicillium. Mycologia 47(5): 669–687. https://doi.org/10.1080/00275514.1955.12024485
  • Bonifacio E, Zanini E et al. (1997) Pedogenesis in a soil catena on serpentinite in north-western Italy. Geoderma 75(1–2): 33–51. https://doi.org/10.1016/S0016-7061(96)00076-6
  • Boonmee S, Wanasinghe DN et al. (2021) Fungal diversity notes 1387–1511: taxonomic and phylogenetic contributions on genera and species of fungal taxa. Fungal Diversity 111: 1–335. https://doi.org/10.1007/s13225-021-00489-3
  • Botha D, Barnard S, Claassens S et al. (2024) Soil type and precipitation level have a greater influence on fungal than bacterial diversity in serpentine and non‐serpentine biological soil crusts. Ecological Research 39(6): 862–878. https://doi.org/10.1111/1440-1703.12500
  • Chan JF, Lau SK et al. (2016) Talaromyces (Penicillium) marneffei infection in non-HIV-infected patients. Emerging Microbes and Infections 5(1): 1–9. https://doi.org/10.1038/emi.2016.18
  • Chang JH, Kao HW, Wang YZ (2010) Molecular phylogeny of Cercophora, Podospora, and Schizothecium (Lasiosphaeriaceae, Pyrenomycetes). Taiwania 55(2): 110–116.
  • Carbone I, Kohn LM (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91(3): 553–556. https://doi.org/10.1080/00275514.1999.12061051
  • Chen AJ, Sun BD et al. (2016) New Talaromyces species from indoor environments in China. Studies in Mycology 84(1): 119–144. https://doi.org/10.1016/j.simyco.2016.11.003
  • Chen Z, Wang Q et al. (2020) Fungal community composition change and heavy metal accumulation in response to the long-term application of anaerobically digested slurry in a paddy soil. Ecotoxicology and Environmental Safety 196: 110453. https://doi.org/10.1016/j.ecoenv.2020.110453
  • Cheng CH, Jien SH et al. (2009) Geochemical element differentiation in serpentine soils from the ophiolite complexes, eastern Taiwan. Soil Science 174(5): 283–291. https://doi.org/10.1097/SS.0b013e3181a4bf68
  • Chethana KWT, Niranjan M et al. (2021) AJOM new records and collections of fungi: 101–150. Asian Journal of Mycology 4: 113–260. https://doi.org/10.5943/ajom/4/1/8
  • Choi YJ, Eom H et al. (2024) Fungal diversity in Nam River and their biodegradative activities. Mycobiology 52(2): 102–110. https://doi.org/10.1080/12298093.2024.2324575
  • Chuang WY, Lin YC et al. (2024) Phylogenetic diversity and morphological characterization of cordycipitaceous species in Taiwan. Studies in Mycology 109(1): 6–61. https://doi.org/10.3114/sim.2024.109.01
  • Clum FM (1955) A new genus in the Aspergillaceae. Mycologia 47(6): 899–901. https://doi.org/10.1080/00275514.1955.12024505
  • Crous PW, Gams W et al. (2004) MycoBank: an online initiative to launch mycology into the 21st century. Studies in mycology 50(1): 19–22. https://edepot.wur.nl/31039
  • Crous PW, Shivas RG et al. (2014) Fungal planet description sheets: 214–280. Persoonia 32: 184–306. https://doi.org/10.3767/003158514X682395
  • Crous PW, Wingfield MJ et al. (2017) Fungal planet description sheets: 625–715. Persoonia 39: 270–467. https://doi.org/10.3767/persoonia.2017.39.11
  • Crous PW, Luangsa-ard JJ et al. (2018a) Fungal Planet description sheets: 785–867. Persoonia 41: 238–417. https://doi.org/10.3767/persoonia.2018.41.12
  • Crous PW, Schumacher RK et al. (2018b) New and interesting fungi. 1. Fungal Systematics and Evolution 1: 169–215. https://doi.org/10.3114/fuse.2018.01.08
  • Crous PW, Wingfield MJ et al. (2020) Fungal planet description sheets: 1042–1111. Persoonia 44: 301–459. https://doi.org/10.3767/persoonia.2020.44.11
  • Crous PW, Begoude BAD et al. (2022) New and interesting fungi. 5. Fungal Systematics and Evolution 10: 19–90. https://doi.org/10.3114/fuse.2022.10.02
  • da Silva M, Umbuzeiro GA et al. (2003) Filamentous fungi isolated from estuarine sediments contaminated with industrial discharges. Soil and Sediment Contamination 12(3): 345–356. https://doi.org/10.1080/713610976
  • Daghino S, Murat C et al. (2012) Fungal diversity is not determined by mineral and chemical differences in serpentine substrates. PLOS ONE 7(9): e44233. https://doi.org/10.1371/journal.pone.0044233
  • de Gruyter J, Noordeloos ME (1992) Contributions towards a monograph of Phoma (Coelomycetes)-I. 1. Section Phoma: Taxa with very small conidia in vitro. Persoonia 15: 71–92.
  • de Gruyter J, Woudenberg JH et al. (2010) Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma. Mycologia 102(5): 1066–1081. https://doi.org/10.3852/09-240
  • de Gruyter J, Woudenberg JHC et al. (2013) Redisposition of Phoma-like anamorphs in Pleosporales. Studies in Mycology 75(1): 1–36. https://doi.org/10.3114/sim0004
  • Dong W, Wang B et al. (2020) Freshwater Dothideomycetes. Fungal Diversity 105: 319–575. https://doi.org/10.1007/s13225-020-00463-5
  • Ebead GA, Overy DP et al. (2012) Westerdykella reniformis sp. nov., producing the antibiotic metabolites melinacidin IV and chetracin B. IMA Fungus 3: 189–201. https://doi.org/10.5598/imafungus.2012.03.02.11
  • Ellegaard-Jensen L, Aamand J et al. (2013) Strains of the soil fungus Mortierella show different degradation potentials for the phenylurea herbicide diuron. Biodegradation 24: 765–774. https://doi.org/10.1007/s10532-013-9624-7
  • Fernandez S, Seoane S, Merino A (1999) Plant heavy metal concentrations and soil biological properties in agricultural serpentine soils. Communications in soil science and plant analysis 30(13–14): 1867–1884. https://doi.org/10.1080/00103629909370338
  • Fisher NL, Burgess LW et al. (1982) Carnation leaves as a substrate and for preserving cultures of Fusarium species. Phytopathology 72(1): 151–153. https://doi.org/10.1094/Phyto-72-151
  • Gadd GM (2007) Geomycology: biogeochemical transformations of rocks, minerals, metals and radionuclides by fungi, bioweathering and bioremediation. Mycological Research 111(1): 3–49. https://doi.org/10.1016/j.mycres.2006.12.001
  • Gajewska J, Floryszak-Wieczorek J et al. (2022) Fungal and oomycete pathogens and heavy metals: an inglorious couple in the environment. IMA Fungus 13(1): 6. https://doi.org/10.1186/s43008-022-00092-4
  • Gams W (1975) Cephalosporium-like Hyphomycetes: some tropical species. Transactions of the British Mycological Society 64(3): 389–404. https://doi.org/10.1016/S0007-1536(75)80138-0
  • Giraldo A, Gené J et al. (2015) Phylogeny of Sarocladium (Hypocreales). Persoonia 34(1): 10–24. https://doi.org/10.3767/003158515X685364
  • Giraldo A, Crous PW (2019) Inside Plectosphaerellaceae. Studies in Mycology 92(1): 227–286. https://doi.org/10.1016/j.simyco.2018.10.005
  • Giraldo A, Hernández-Restrepo M, Crous PW (2019) New plectosphaerellaceous species from Dutch garden soil. Mycological Progress 18(9): 1135–1154. https://doi.org/10.1007/s11557-019-01511-4
  • Glass NL, Donaldson GC (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61(4): 1323–1330. https://doi.org/10.1128/aem.61.4.1323-1330.1995
  • Goh TK, Ho WH et al. (1997) Four new species of Xylomyces from submerged wood. Mycological Research 101(11): 1323–1328. https://doi.org/10.1017/S0953756297004164
  • Goh J, Jeon YJ et al. (2020) Isolation and characterization of eleven unrecorded Pezizomycotina species from freshwater ecosystems in Korea. The Korean Journal of Mycology 48(4): 423–443.
  • Goh J, Mun HY, Oh Y (2021) Seven previously unrecorded fungal species isolated from freshwater ecosystems in Korea. The Korean Journal of Mycology 49(2): 183–197.
  • Gonçalves SC, Martins-Loução MA, Freitas H (2009) Evidence of adaptive tolerance to nickel in isolates of Cenococcum geophilum from serpentine soils. Mycorrhiza 19: 221–230. https://doi.org/10.1007/s00572-008-0211-4
  • González-Teuber M, Vilo C, Bascuñán-Godoy L (2017) Molecular characterization of endophytic fungi associated with the roots of Chenopodium quinoa inhabiting the Atacama Desert, Chile. Genomics Data 11: 109–112. https://doi.org/10.1016/j.gdata.2016.12.015
  • Groenewald JZ, Nakashima C et al. (2013) Species concepts in Cercospora: spotting the weeds among the roses. Studies in Mycology 75(1): 115–170. https://doi.org/10.3114/sim0012
  • Guarro J, Al-Saadoon AH et al. (1997) Two new cleistothecial ascomycetes from Iraq. Mycologia 89(6): 955–961. https://doi.org/10.1080/00275514.1997.12026867
  • Guerra-Mateo D, Cano-Lira JF et al. (2024) Sunken riches: Ascomycete diversity in the Western Mediterranean Coast through direct plating and flocculation, and description of four new taxa. Journal of Fungi 10(4): 281. https://doi.org/10.3390/jof10040281
  • Harms K, Milic A et al. (2021) Three New Derivatives of Zopfinol from Pseudorhypophila mangenotii gen. et comb. nov. Journal of Fungi 7(3): 181. https://doi.org/10.3390/jof7030181
  • Hashem AH, Attia MS et al. (2023) Bioactive compounds and biomedical applications of endophytic fungi: a recent review. Microbial Cell Factories 22(1): 107. https://doi.org/10.1186/s12934-023-02131-0
  • Heo YM, Lee H et al. (2019) Fungal diversity in intertidal mudflats and abandoned solar salterns as a source for biological resources. Marine Drugs 17(11): 601. https://doi.org/10.3390/md17110601
  • Hong SB, Cho HS et al. (2006) Novel Neosartorya species isolated from soil in Korea. International Journal of Systematic and Evolutionary Microbiology 56(2): 477–486. https://doi.org/10.1099/ijs.0.63980-0
  • Hou D, O'Connor D et al. (2020) Metal contamination and bioremediation of agricultural soils for food safety and sustainability. Nature Reviews Earth and Environment 1(7): 366–381. https://doi.org/10.1038/s43017-020-0061-y
  • Hou LW, Giraldo A et al. (2023) Redisposition of acremonium-like fungi in Hypocreales. Studies in Mycology 105: 23–203. https://doi.org/10.3114/sim.2023.105.02
  • Hou YM, Zhang X et al. (2019) Genera Acremonium and Sarocladium cause brown spot on bagged apple fruit in China. Plant Disease 103(8): 1889–1901. https://doi.org/10.1094/PDIS-10-18-1794-RE
  • Hseu ZY, Lai YJ (2017) Nickel accumulation in paddy rice on serpentine soils containing high geogenic nickel contents in Taiwan. Environmental Geochemistry and Health 39(6): 1325–1334. https://doi.org/10.1007/s10653-017-9925-6
  • Hseu ZY, Zehetner F et al. (2015) Clay-mineral transformations and heavy-metal release in Paddy soils formed on serpentinites in eastern Taiwan. Clays and Clay Minerals 63: 119–131. https://doi.org/10.1346/CCMN.2015.0630204
  • Hsieh MS (2020) Effects of nickel and chromium on microbial communities and root-knot nematode in serpentine soil. Master thesis. National Taiwan University, Taipei, Taiwan.
  • Hsu SY, Xu YC et al. (2024) Hidden diversity of Pestalotiopsis and Neopestalotiopsis (Amphisphaeriales, Sporocadaceae) species allied with the stromata of entomopathogenic fungi in Taiwan. MycoKeys 101: 275. https://doi.org/10.3897/mycokeys.101.113090
  • Hurdeal VG, Jones EBG et al. (2022) Expanding the diversity of mucoralean fungi from northern Thailand: novel Backusella species from soil. Phytotaxa 559(3): 275–284. https://doi.org/10.11646/phytotaxa.559.3.5
  • Hussien AKE, Hussein NAG, El-Nagdy MA (2023) Biodiversity of Chaetomium-like genera in the Nile River, at Assiut, Egypt. Assiut University Journal of Multidisciplinary Scientific Research 52(3) 295–321. https://doi.org/10.21608/aunj.2023.214418.1054
  • Hyde KD, Chaiwan N et al. (2018) Mycosphere notes 169–224. Mycosphere 9(2): 271–430. https://doi.org/10.5943/mycosphere/9/2/8
  • Hyde KD, Wijesinghe SN et al. (2024) Mycosphere notes 469–520. Mycosphere 15: 1294–1454. https://doi.org/10.5943/mycosphere/15/1/11
  • Imrefi I, Knapp DG, Kovács GM (2024) Poaceascoma zborayi sp. nov. and Agrorhizomyces patris gen. et spec. nov.–Two novel dark septate endophytes colonizing wheat (Triticum aestivum) roots from a cropland in Hungary. Mycological Progress 23(1): 35. https://doi.org/10.1007/s11557-024-01970-4
  • Ito T, Nakagiri A (1995) Westerdykella globosa, a proposal for a new combination. Mycoscience 36: 361–363. https://doi.org/10.1007/BF02268614
  • Jeewon R, Hyde KD (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7(11): 1669–1677. https://doi.org/10.5943/mycosphere/7/11/4
  • Khan I, Ali M et al. (2019) Mycoremediation: a treatment for heavy metal-polluted soil using indigenous metallotolerant fungi. Environmental Monitoring and Assessment 191: 1–15. https://doi.org/10.1007/s10661-019-7781-9
  • Koner S, Chen JS et al. (2023) Unravelling the ultramafic rock-driven serpentine soil formation leading to the geo-accumulation of heavy metals: An impact on the resident microbiome, biogeochemical cycling and acclimatized eco-physiological profiles. Environmental Research 216: 114664. https://doi.org/10.1016/j.envres.2022.114664
  • Kumar RS, Koner S et al. (2023) Deciphering endemic rhizosphere microbiome community's structure towards the host-derived heavy metals tolerance and plant growth promotion functions in serpentine geo-ecosystem. Journal of Hazardous Materials 452: 131359. https://doi.org/10.1016/j.jhazmat.2023.131359
  • Kumarathilaka P, Dissanayake CB, Vithanage MA (2014) Geochemistry of serpentinite soils: A brief overview. Journal of Geological Society of Sri Lanka 16: 53–63.
  • Kumari R, Jayachandran LE, Ghosh AK (2019) Investigation of diversity and dominance of fungal biota in stored wheat grains from governmental warehouses in West Bengal, India. Journal of the Science of Food and Agriculture 99(7): 3490–3500. https://doi.org/10.1002/jsfa.9568
  • Latz MA, Jensen B et al. (2020) Identification of two endophytic fungi that control Septoria tritici blotch in the field, using a structured screening approach. Biological Control 141: 104128. https://doi.org/10.1016/j.biocontrol.2019.104128
  • Lee JW, Seo CW et al. (2023) Diversity and dynamics of marine arenicolous fungi in three seasides of the Korean peninsula. Journal of Microbiology 61(1): 63–82. https://doi.org/10.1007/s12275-023-00011-1
  • Lee W, Kim JS et al. (2025) Taxonomic study of sixteen unrecorded and five new species of Hypocreales from the Korean marine environment. Mycobiology 53(2): 144–167. https://doi.org/10.1080/12298093.2024.2418664
  • Li X, Wang H et al. (2020) Distribution characteristics of fungal communities with depth in paddy fields of three soil types in China. Journal of Microbiology 58: 279–287. https://doi.org/10.1007/s12275-020-9409-8
  • Li Z, Xu J et al. (2015) Bioleaching of lizardite by magnesium-and nickel-resistant fungal isolate from serpentinite soils–implication for carbon capture and storage. Geomicrobiology Journal 32(2): 181–192. https://doi.org/10.1080/01490451.2013.835888
  • Liang J, Li G et al. (2019) Myrothecium-like new species from turfgrasses and associated rhizosphere. MycoKeys 51: 29–53. https://doi.org/10.3897/mycokeys.51.31957
  • Lipovy B, Kocmanova I et al. (2018) The first isolation of Westerdykella dispersa in a critically burned patient. Folia Microbiologica 63: 479–482. https://doi.org/10.1007/s12223-018-0590-7
  • Liu H, Choi H et al. (2025) Discovering fungal communities in roots of Zoysia japonica and characterising novel species and their antifungal activities. IMA Fungus 16: e138479. https://doi.org/10.3897/imafungus.16.138479
  • Liu SL, Zhao P et al. (2024) Catalogue of fungi in China 1. New taxa of plant-inhabiting fungi. Mycology 16(1): 1–58. https://doi.org/10.1080/21501203.2024.2316066
  • Liu TS, Guo HY et al. (2007) Preliminary study on heavy metal characteristics in serpentinite-developed soil regions in eastern Taiwan. Journal of Taiwan Agricultural Research 56: 65–78.
  • Liu YJ, Whelen S, Hall BD (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16(12): 1799–1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
  • Lombard L, Houbraken J et al. (2016) Generic hyper-diversity in Stachybotriaceae. Persoonia 36(1): 156–246. https://doi.org/10.3767/003158516X691582
  • Luo ZL, Bahkali AH et al. (2016) Poaceascoma aquaticum sp. nov. (Lentitheciaceae), a new species from submerged bamboo in freshwater. Phytotaxa 253(1): 71–80. https://doi.org/10.11646/phytotaxa.253.1.5
  • Luo ZL, Hyde KD et al. (2019) Freshwater sordariomycetes. Fungal Diversity 99: 451–660. https://doi.org/10.1007/s13225-019-00438-1
  • Manoch L, Dethoup T et al. (2013) Two new Talaromyces species from soil in Thailand. Mycoscience 54(5): 335–342. https://doi.org/10.1016/j.myc.2012.12.002
  • Mapook A, Hyde KD et al. (2020) Taxonomic and phylogenetic contributions to fungi associated with the invasive weed Chromolaena odorata (Siam weed). Fungal Diversity 101: 1–175. https://doi.org/10.1007/s13225-020-00444-8
  • Marin-Felix Y, Miller AN et al. (2020) Re-evaluation of the order Sordariales: delimitation of Lasiosphaeriaceae s. str., and introduction of the new families Diplogelasinosporaceae, Naviculisporaceae, and Schizotheciaceae. Microorganisms 8(1430): 1–41. https://doi.org/10.3390/microorganisms8091430
  • McGahan DG, Southard RJ, Claassen VP (2008) Tectonic inclusions in serpentinite landscapes contribute plant nutrient calcium. Soil Science Society of America Journal 72(3): 838–847. https://doi.org/10.2136/sssaj2007.0159
  • Miller AN, Huhndorf SM (2005) Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi). Molecular Phylogenetics and Evolution 35(1): 60–75. https://doi.org/10.1016/j.ympev.2005.01.007
  • Mo YX, Kan YZ et al. (2024) Characterization and effect of a nematophagous fungus Talaromyces cystophila sp. nov. for the biological control of corn cyst nematode. Phytopathology 114(3): 618–629. https://doi.org/10.1094/PHYTO-02-23-0045-R
  • Naraghi L, Heydari A et al. (2012) Biocontrol agent Talaromyces flavus stimulates the growth of cotton and potato. Journal of Plant Growth Regulation 31: 471–477. https://doi.org/10.1007/s00344-011-9256-2
  • Nicoletti R, Bellavita R, Falanga A (2023a) The outstanding chemodiversity of marine-derived Talaromyces. Biomolecules 13(7): 1021. https://doi.org/10.3390/biom13071021
  • Nicoletti R, Zimowska B (2023b) Endophytic fungi of hazelnut (Corylus avellana). Plant Protection Science 59(2): 107–123. https://doi.org/10.17221/133/2022-PPS
  • Ningsih BNS, Rukachaisirikul V et al. (2024) Talarostatin, a vermistatin derivative from the soil-derived fungus Talaromyces thailandensis PSU-SPSF059. Natural Product Research 38(15): 2535–2542. https://doi.org/10.1080/14786419.2023.2188209
  • Noguchi MT, Nagase H et al. (2022) Taxonomical identification of Chinese cabbage yellows inhibitory fungus isolated from disease suppressive soil. Journal of General Plant Pathology 88(4): 239–245. https://doi.org/10.1007/s10327-022-01058-5
  • Nguyen TTT, Lee HB (2023) A new species and five new records of Talaromyces (Eurotiales, Aspergillaceae) belonging to section Talaromyces in Korea. Mycobiology 51(5): 320–332. https://doi.org/10.1080/12298093.2023.2265645
  • Ou JH, Lin GC, Chen CY (2020) Sarocladium species associated with rice in Taiwan. Mycological Progress 19(1): 67–80. https://doi.org/10.1007/s11557-019-01543-w
  • Overy DP, Bayman P et al. (2014) An assessment of natural product discovery from marine (sensu strictu) and marine-derived fungi. Mycology 5(3): 145–167. https://doi.org/10.1080/21501203.2014.931308
  • Oze C, Skinner C et al. (2008) Growing up green on serpentine soils: Biogeochemistry of serpentine vegetation in the Central Coast Range of California. Applied Geochemistry 23(12): 3391–3403. https://doi.org/10.1016/j.apgeochem.2008.07.014
  • Pal A, Wauters G, Paul AK (2007) Nickel tolerance and accumulation by bacteria from rhizosphere of nickel hyperaccumulators in serpentine soil ecosystem of Andaman, India. Plant and Soil 293: 37–48. https://doi.org/10.1007/s11104-007-9195-7
  • Panaccione DG, Sheets NL et al. (2001) Diversity of Cenococcum geophilum isolates from serpentine and non-serpentine soils. Mycologia 93(4): 645–652. https://doi.org/10.1080/00275514.2001.12063196
  • Pawar VH, Mathur PN, Thirumalachar MJ (1967) Species of Phoma isolated from marine soils in India. Transactions of the British Mycological Society 50(2): 259–265. https://doi.org/10.1016/S0007-1536(67)80036-6
  • Peterson SW, Jurjević Ž (2019) The Talaromyces pinophilus species complex. Fungal Biology 123(10): 745–762. https://doi.org/10.1016/j.funbio.2019.06.007
  • Phookamsak R, Manamgoda DS et al. (2015) Poaceascoma helicoides gen et sp. nov., a new genus with scolecospores in Lentitheciaceae. Cryptogamie, Mycologie 36(2): 225–236. https://doi.org/10.7872/crym/v36.iss2.2015.225
  • Phookamsak R, Jiang H et al. (2022) Bambusicolous fungi in Pleosporales: Introducing four novel taxa and a new habitat record for Anastomitrabeculia didymospora. Journal of Fungi 8(6): 630. https://doi.org/10.3390/jof8060630
  • Pietro-Souza W, Mello IS et al. (2017) Endophytic fungal communities of Polygonum acuminatum and Aeschynomene fluminensis are influenced by soil mercury contamination. PLOS ONE 12(7): e0182017. https://doi.org/10.1371/journal.pone.0182017
  • Pramunadipta S, Widiastuti A et al. (2020) Sarocladium oryzae associated with sheath rot disease of rice in Indonesia. Biodiversitas Journal of Biological Diversity 21(3): 1243–1249. https://doi.org/10.13057/biodiv/d210352
  • Rai JN, Tewari JP (1963) On some isolates of the genus Preussia Fuckel from Indian soils. Proceedings/Indian Academy of Sciences 57(1): 45–55. https://doi.org/10.1007/BF03053881
  • Réblová M, Miller AN et al. (2016) Recommendations for competing sexual-asexually typified generic names in Sordariomycetes (except Diaporthales, Hypocreales, and Magnaporthales). IMA Fungus 7(1): 131–153. https://doi.org/10.5598/imafungus.2016.07.01.08
  • Réblová M, Gams W, Seifert KA (2011) Monilochaetes and allied genera of the Glomerellales, and a reconsideration of families in the Microascales. Studies in Mycology 68(1): 163–191. https://doi.org/10.3114/sim.2011.68.07
  • Rehner SA, Samuels GJ (1994) Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences. Mycological Research 98(6): 625–634. https://doi.org/10.1016/S0953-7562(09)80409-7
  • Rehner SA, Buckley E (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97(1): 84–98. https://doi.org/10.1080/15572536.2006.11832842
  • Roccotiello E, Manfredi A et al. (2010) Zinc tolerance and accumulation in the ferns Polypodium cambricum L. and Pteris vittata L. Ecotoxicology and Environmental Safety 73(6): 1264–1271. https://doi.org/10.1016/j.ecoenv.2010.07.019
  • Ronquist F, Teslenko M et al. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61(3): 539–542. https://doi.org/10.1093/sysbio/sys029
  • Samarakoon BC, Wanasinghe DN et al. (2024) Exploring fungi: a taxonomic and phylogenetic study of leaf-inhabiting Ascomycota in Musa species from northern Thailand, with a global checklist. Mycosphere 15(1): 1901–2174. https://doi.org/10.5943/mycosphere/15/1/17
  • Senabio JA, Pereira FDC et al. (2023) Enhanced mercury phytoremediation by Pseudomonodictys pantanalensis sp. nov. A73 and Westerdykella aquatica P71. Brazilian Journal of Microbiology 54(2): 949–964. https://doi.org/10.1007/s42770-023-00924-4
  • Solano-Arguedas AF, Boothman C et al. (2022) Geochemistry and microbiology of tropical serpentine soils in the Santa Elena Ophiolite, a landscape-biogeographical approach. Geochemical Transactions 23(1): 2. https://doi.org/10.1186/s12932-022-00079-5
  • Song HY, El Sheikha AF et al. (2020) Westerdykella aquatica sp. nov., producing phytase. Mycotaxon 135(2): 281–292. https://doi.org/10.5248/135.281
  • Stolk AC (1955) Emericellopsis minima sp. nov. and Westerdykella ornata gen. nov., sp. nov. Transactions of the British Mycological Society 38(4): 419–424. https://doi.org/10.1016/S0007-1536(55)80046-0
  • Su YY, Qi YL, Cai L (2012) Induction of sporulation in plant pathogenic fungi. Mycology 3(3): 195–200. https://doi.org/10.1080/21501203.2012.719042
  • Sue PK, Gurda GT et al. (2014) First report of Westerdykella dispersa as a cause of an angioinvasive fungal infection in a neutropenic host. Journal of Clinical Microbiology 52(12): 4407–4411. https://doi.org/10.1128/JCM.02012-14
  • Summerbell RC, Gueidan C et al. (2018) The protean Acremonium. A. sclerotigenum/egyptiacum: revision, food contaminant, and human disease. Microorganisms 6(3): 88. https://doi.org/10.3390/microorganisms6030088
  • Sung GH, Sung JM et al. (2007) A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach. Molecular Phylogenetics and Evolution 44(3): 1204–1223. https://doi.org/10.1016/j.ympev.2007.03.011
  • Surono S, Zaffan ZR et al. (2023) The first report of Pyrenochaetopsis terricola as a dark septate endophytic fungus antagonistic to Fusarium oxysporum f. sp. Lycopersici, a pathogen causing wilt disease in tomato plants. Research Square. https://doi.org/10.21203/rs.3.rs-2823666/v1
  • Tanaka K, Hirayama K et al. (2015) Revision of the Massarineae (Pleosporales, Dothideomycetes). Studies in Mycology 82: 75–136. https://doi.org/10.1016/j.simyco.2015.10.002
  • Tennakoon DS, Kuo CH et al. (2021) Taxonomic and phylogenetic contributions to Celtis formosana, Ficus ampelas, F. septica, Macaranga tanarius and Morus australis leaf litter inhabiting microfungi. Fungal Diversity 108: 1–215. https://doi.org/10.1007/s13225-021-00474-w
  • Trifinopoulos J, Nguyen LT et al. (2016) W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research 44(W1): W232–W235. https://doi.org/10.1093/nar/gkw256
  • Tsai I, Chung CL et al. (2021) Cryptic diversity, molecular systematics, and pathogenicity of genus Pestalotiopsis and allied genera causing gray blight disease of tea in Taiwan, with a description of a new Pseudopestalotiopsis species. Plant Disease 105(2): 425–443. https://doi.org/10.1094/PDIS-05-20-1134-RE
  • Valenzuela-Lopez N, Cano-Lira JF et al. (2018) Coelomycetous Dothideomycetes with emphasis on the families Cucurbitariaceae and Didymellaceae. Studies in Mycology 90(1): 1–69. https://doi.org/10.1016/j.simyco.2017.11.003
  • Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172(8): 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  • Visagie CM, Yilmaz N et al. (2024) A review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales species. Studies in Mycology 107(1): 1–66. https://doi.org/10.3114/sim.2024.107.01
  • Wang XW, Bai FY et al. (2019) Phylogenetic re-evaluation of Thielavia with the introduction of a new family Podosporaceae. Studies in Mycology 93: 155–252. https://doi.org/10.1016/j.simyco.2019.08.002
  • Watanabe T (2002) Pictorial atlas of soil and seed fungi: morphologies of cultured fungi and key to species. CRC press. https://doi.org/10.1201/9781420040821
  • White TJ, Bruns TD et al. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: a Guide to Methods and Applications 18(1): 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  • Woudenberg JHC, Aveskamp MM et al. (2009) Multiple Didymella teleomorphs are linked to the Phoma clematidina morphotype. Persoonia 22(1): 56–62. https://doi.org/10.3767/003158509X427808
  • Xu D, Luo M et al. (2017) Cytochalasan and tyrosine-derived alkaloids from the marine sediment-derived fungus Westerdykella dispersa and their bioactivities. Scientific Reports 7(1): 11956. https://doi.org/10.1038/s41598-017-12327-1
  • Yeh YH, Kirschner R (2014) Sarocladium spinificis, a new endophytic species from the coastal grass Spinifex littoreus in Taiwan. Botanical Studies 55: 1–6. https://doi.org/10.1186/1999-3110-55-25
  • Yilmaz N, Visagie CM et al. (2014) Polyphasic taxonomy of the genus Talaromyces. Studies in Mycology 78: 175–341. https://doi.org/10.1016/j.simyco.2014.08.001
  • Yilmaz N, López-Quintero CA et al. (2016) Four novel Talaromyces species isolated from leaf litter from Colombian Amazon rain forests. Mycological Progress 15: 1041–1056. https://doi.org/10.1007/s11557-016-1227-3
  • Zaheer A, Tang C et al. (2024) The changes of microbial diversity and isolation of microorganism in soil for alleviating the production decreasing after continuous cultivation of Ganoderma lucidum. Current Microbiology 81(10): 321. https://doi.org/10.1007/s00284-024-03852-0
  • Zhai MM, Li J et al. (2016) The bioactive secondary metabolites from Talaromyces species. Natural Products and Bioprospecting 6: 1–24. https://doi.org/10.1007/s13659-015-0081-3
  • Zhang H, Wei TP et al. (2021) Multigene phylogeny, diversity and antimicrobial potential of endophytic Sordariomycetes from Rosa roxburghii. Frontiers in Microbiology 12: 755919. https://doi.org/10.3389/fmicb.2021.755919
  • Zhang JF, Liu JK et al. (2023) Ascomycetes from karst landscapes of Guizhou Province, China. Fungal Diversity 122(1): 1–160. https://doi.org/10.1007/s13225-023-00524-5
  • Zhang L, Wang C et al. (2024) Reproductive strategy response of the fungi Sarocladium and the evaluation for remediation under stress of heavy metal Cd (II). Ecotoxicology and Environmental Safety 271: 115967. https://doi.org/10.1016/j.ecoenv.2024.115967
  • Zhang ZF, Zhou SY et al. (2020) Culturable mycobiota from Karst caves in China II, with descriptions of 33 new species. Fungal Diversity 106: 29–136. https://doi.org/10.1007/s13225-020-00453-7
  • Zimowska B (2007) New Phoma species on Leonurus cardiaca. Acta Mycologica 42(1): 119–123. https://doi.org/10.5586/am.2007.012