Published June 26, 2025
| Version v2
Dataset
Open
Spatial and single-cell expression analyses reveal complex expression domains in early wheat spike development
Authors/Creators
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1.
University of California, Davis
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2.
Howard Hughes Medical Institute
Description
These are the scripts and files used in the wheat spatial transcriptomic and single-cell sequencing study.
This update added scripts and data for smFISH gene imputation, cellular trajectories using Monocle 3, and gene network analysis. We also added the source file for the visualization website for displaying smFISH original and imputed genes.
We also corrected the smFISH stage W3.25 to W3.5.
Files
cluster_correlations.zip
Files
(7.5 GB)
| Name | Size | Download all |
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md5:e9a3715117436dccb187bb35a70949bc
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7.6 MB | Preview Download |
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md5:cb1fc226c3753de0a77c7a4107e005bb
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317.7 MB | Preview Download |
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md5:a9f27508de1d31a0a464a4933b5452ac
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1.5 MB | Preview Download |
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md5:7db6c1f063be16a8387f38ac771165ea
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1.4 GB | Preview Download |
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md5:8fbb84eaa74b5a69c5a2590355057302
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47.3 MB | Preview Download |
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md5:be504c74ed0dd59c89a7729804543af6
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99.6 MB | Preview Download |
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md5:235e598f155c74b64675251d8638b666
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12.2 MB | Preview Download |
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md5:c8f635301cd80992cea2ac9c21d13875
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2.9 GB | Preview Download |
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md5:7f8d92da46fdeb55f2074e9d5d0ce460
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79.4 kB | Preview Download |
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md5:c908b44d4da0a908595387517fae916d
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2.7 GB | Preview Download |
Additional details
Related works
- Is cited by
- Publication: 10.1101/2025.02.15.638402 (DOI)
Funding
- Howard Hughes Medical Institute
- National Institute of Food and Agriculture
- WheatCAP 2022-68013-3643
- National Institute of Food and Agriculture
- 2022-67013-36209
- National Institute of Food and Agriculture
- USDA-NIFA HATCH project CA-D-PLB-2850-H
- University of California, Davis
- UC Davis new faculty start-up funding
Dates
- Updated
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2025-06-26data set updated