Input data for DROMA_DB
Description
The project main page in mugpeng/DROMA: Drug Response Omics association MAp (DROMA, 卓玛)
Input data made from: mugpeng/DROMA_DB: Sqlite db and DromaSet obj for Drug Response Omics association MAp. (DROMA)
Use the database and relavent package from: mugpeng/DROMA_Set: DROMASet is a comprehensive R package for managing and analyzing drug response and omics data across multiple projects. It provides a robust framework for handling complex multi-omics datasets with integrated drug sensitivity information, enabling seamless cross-project comparisons and analyses.
droma.sqlite includes:
|
project_name |
dataset_type |
data_types |
sample_count |
drug_count |
created_date |
updated_date |
|
CCLE |
CellLine |
cnv,drug,drug_dose,fusion,meth,mRNA,mutation_gene,mutation_site,proteinms,proteinrppa |
1811 |
24 |
2025-06-13 10:16:56 |
2025-06-25 23:18:51 |
|
CTRP1 |
CellLine |
drug |
241 |
354 |
2025-06-13 10:16:56 |
2025-06-13 10:17:03 |
|
CTRP2 |
CellLine |
drug,drug_dose |
887 |
545 |
2025-06-13 10:16:56 |
2025-06-24 12:18:53 |
|
FIMM |
CellLine |
drug |
50 |
52 |
2025-06-13 10:16:56 |
2025-06-13 10:17:03 |
|
GDSC1 |
CellLine |
drug,drug_dose |
983 |
339 |
2025-06-13 10:16:56 |
2025-06-23 21:33:47 |
|
GDSC2 |
CellLine |
drug,drug_dose |
806 |
188 |
2025-06-13 10:16:56 |
2025-06-24 08:23:01 |
|
GDSC |
CellLine |
cnv,mRNA,mutation_gene,mutation_site |
1028 |
0 |
2025-06-13 10:16:56 |
2025-06-23 22:10:47 |
|
GRAY |
CellLine |
drug |
71 |
106 |
2025-06-13 10:16:56 |
2025-06-13 10:17:03 |
|
NCI60 |
CellLine |
drug,mRNA |
162 |
54773 |
2025-06-13 10:16:56 |
2025-06-13 10:17:03 |
|
PDTXBreast |
PDC |
drug |
37 |
98 |
2025-06-13 10:16:56 |
2025-06-13 10:17:03 |
|
Prism |
CellLine |
drug,drug_dose |
521 |
1442 |
2025-06-13 10:16:56 |
2025-06-24 18:43:07 |
|
Tavor |
PDC |
drug,mRNA |
53 |
46 |
2025-06-13 10:16:56 |
2025-06-13 10:17:03 |
|
UHNBreast |
CellLine |
drug |
57 |
8 |
2025-06-13 10:16:56 |
2025-06-13 10:17:03 |
|
UMPDO1 |
PDO |
drug,mRNA,mutation_gene,mutation_site |
112 |
49 |
2025-06-13 10:16:56 |
2025-06-21 20:17:39 |
|
UMPDO2 |
PDO |
cnv,drug,mRNA,mutation_gene,mutation_site |
40 |
49 |
2025-06-13 10:16:56 |
2025-06-21 20:23:05 |
|
UMPDO3 |
PDO |
drug,mRNA |
42 |
48 |
2025-06-13 10:16:56 |
2025-06-13 10:17:03 |
|
Xeva |
PDX |
cnv,drug,mRNA,mutation_gene |
266 |
38 |
2025-06-13 10:16:56 |
2025-06-24 22:02:43 |
|
gCSI |
CellLine |
cnv,drug,drug_dose,mutation_gene |
579 |
44 |
2025-06-13 10:16:56 |
2025-06-24 22:20:23 |
|
LICOB |
PDO |
cnv,drug,meth,mRNA,mutation_gene,proteinms |
65 |
76 |
2025-06-18 15:33:13 |
2025-06-18 15:46:20 |
|
CTRDB |
Clinical |
mRNA |
2745 |
36 |
2025-06-23 10:59:04 |
2025-06-23 10:59:04 |
|
HKUPDO |
PDO |
drug,fusion,mRNA,mutation_gene,mutation_site |
69 |
37 |
2025-06-23 14:35:49 |
2025-06-23 14:38:54 |
For Xeva(PDX) data, the AAC are calculated by the tumor volume and the details in https://bioconductor.org/packages/release/bioc/vignettes/Xeva/inst/doc/Xeva.pdf
Sample projects also include "drug_dose" data type which is the raw data of drug/sample viability information in different dose and used to calculate the AAC or IC50 value.
Files
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Additional details
Related works
- Cites
- 10.1038/s42003-024-06891-2 (DOI)
Software
- Repository URL
- https://github.com/mugpeng/DROMA_DB/