nf-core
Published June 25, 2025 | Version 2.6.0
Software Open

nf-core/raredisease: 2.6.0 - Cacofonix

Authors/Creators

  • 1. Scilifelab
  • 2. Clinical Genomics Lund
  • 3. University of Gothenburg
  • 4. Dep. of Molecular Medicine (MOMA)
  • 5. Clinical Genomics
  • 6. Karolinska Institutet Library
  • 7. @Clinical-Genomics-Lund
  • 8. Oligonovahub
  • 9. Linköping university hospital
  • 10. @SMD-Bioinformatics-Lund
  • 11. @mendelics
  • 12. @ghga-de @DKFZ-ODCF
  • 13. @seqeralabs
  • 14. Center for Medical Genetics Ghent
  • 15. Robert Bosch GmbH

Description

What's Changed

  • Update SVDB/merge module to fix language server problems by @fellen31 in https://github.com/nf-core/raredisease/pull/684
  • Replace for loop in create_pedigree_file by @fellen31 in https://github.com/nf-core/raredisease/pull/683
  • Skip alignment - start from bam files by @kubranarci in https://github.com/nf-core/raredisease/pull/682
  • Update deepvariant to 1.8.0 by @ramprasadn in https://github.com/nf-core/raredisease/pull/687
  • Address language server issues by @ramprasadn in https://github.com/nf-core/raredisease/pull/688
  • Fix spelling and language server warnings by @fellen31 in https://github.com/nf-core/raredisease/pull/689
  • Handle spring file inputs by @ramprasadn in https://github.com/nf-core/raredisease/pull/678
  • Replace several skip_<tools> parameters with a single skip_tools parameter by @ramprasadn in https://github.com/nf-core/raredisease/pull/690
  • Json schema improvements by @ShimiraOleg in https://github.com/nf-core/raredisease/pull/692
  • Refactor generate_clinical_set subworkflow by @ramprasadn in https://github.com/nf-core/raredisease/pull/693
  • Replace several skip parameters with a skip_subworkflows parameter by @ramprasadn in https://github.com/nf-core/raredisease/pull/694
  • Merge master (2.5.0) to dev by @ramprasadn in https://github.com/nf-core/raredisease/pull/704
  • Refactor repeat annotation by @fellen31 in https://github.com/nf-core/raredisease/pull/702
  • Template update to 3.3.1 by @ramprasadn in https://github.com/nf-core/raredisease/pull/707
  • Important! Template update for nf-core/tools v3.3.1 by @nf-core-bot in https://github.com/nf-core/raredisease/pull/705
  • Fix issues in dev by @ramprasadn in https://github.com/nf-core/raredisease/pull/709
  • Release v2.6.0 by @ramprasadn in https://github.com/nf-core/raredisease/pull/708

New Contributors

  • @fellen31 made their first contribution in https://github.com/nf-core/raredisease/pull/684
  • @kubranarci made their first contribution in https://github.com/nf-core/raredisease/pull/682
  • @ShimiraOleg made their first contribution in https://github.com/nf-core/raredisease/pull/692

Full Changelog: https://github.com/nf-core/raredisease/compare/2.5.0...2.6.0

Files

nf-core/raredisease-2.6.0.zip

Files (3.5 MB)

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md5:99d655eecd5710c9d61f2f90c6b3310b
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/raredisease/tree/2.6.0 (URL)

Software

Repository URL
https://github.com/nf-core/raredisease