Published July 15, 2025
| Version v1
Data paper
Open
Structural and Thermodynamic Impact of Oncogenic Mutations on the Nucleosome Core Particle
Creators
Description
This upload includes six all-atom molecular dynamics trajectories and corresponding topology files used in the study “Structural and Thermodynamic Impact of Oncogenic Mutations on the Nucleosome Core Particle.” Each trajectory is 6 μs long (saved every 240 ps) and excludes water molecules (dry trajectories).
The datasets are organized as follows:
- 1KX5: wild-type nucleosome systems
- E76K: H2BE76K mutant systems
- R92T: H4R92T mutant systems
Simulations were conducted at either 0.15 M or 2.4 M NaCl concentrations.
Please cite the original publication when using these trajectories.
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(18.4 GB)
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Additional details
Software
- Repository URL
- https://github.com/CUNY-CSI-Loverde-Laboratory/Molecular_Dynamics_of_Structural_Effect_of_Oncogenic_Mutations.git
- Programming language
- Python, R
- Development Status
- Active