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Published June 23, 2025 | Version 0.3.2
Software Open

akikuno/TSUMUGI-dev: 0.3.2

Authors/Creators

  • 1. University of Tsukuba

Description

v0.3.2 (2025-06-23)

💥 Breaking Changes

  • Updated to support IMPC Release 23.0
    Upgraded the underlying dataset to the latest IMPC Release 23.0 for improved data coverage and accuracy.
    Issue: #88
    [Commit Detail]

🌟 New Features

  • Human disease gene highlighting
    Added functionality to highlight genes associated with human diseases, enabling researchers to identify disease-relevant gene modules within phenotypic networks. The feature uses Phenodigm algorithm to establish mouse-human disease relationships.
    Issue: #87
    [Commit Detail]
    Thanks to @kinari-labwork for contributing to this issue!

🖼️ User Interface

  • Enhanced footer layout
    Redesigned the footer to better emphasize documentation and inquiry options, improving user access to help resources.
    Issue: #98
    [Commit Detail]

  • Unified mobile control panel
    Consolidated the previously split left/right control panels into a single, unified panel view on mobile devices for improved usability and screen space utilization.
    Issue: #89
    [Commit Detail]

  • Dynamic header font sizing
    Implemented responsive header font sizing that automatically adjusts on mobile devices to ensure text displays properly within a single line, preventing layout issues.
    Issue: #93
    [Commit Detail]

🐛 Bug Fixes

  • Fixed mobile toggle button visibility
    Resolved an issue where the toggle close button was not appearing on mobile devices, restoring proper navigation functionality.
    Issue: #94
    [Commit Detail]

  • Optimized network rendering performance
    Implemented a performance optimization by limiting the maximum number of displayed nodes to 150 (reduced from 200) to prevent rendering delays and ensure smooth user experience with large networks.
    Issue: #103
    [Commit Detail]

  • Improved gene symbol page visualization
    Modified gene symbol pages to display only nodes that are directly connected to the target gene, reducing visual clutter and focusing on relevant gene relationships.
    Issue: #104
    [Commit Detail]

🔧 Maintenance

  • Enhanced raw data distribution
    Added version tags to TSUMUGI_raw_data filenames and expanded format support to include both CSV and Parquet formats, improving data accessibility and compatibility with different analysis tools.
    Issues: #95, #96
    [Commit Detail]

  • Streamlined deployment workflow
    Consolidated the separate testing and production deployment notebooks into a single, unified deployment file, simplifying the release process and reducing maintenance overhead.
    Issue: #101
    [Commit Detail]

Files

akikuno/TSUMUGI-dev-0.3.2.zip

Files (1.7 MB)

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Additional details

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