Test codes, models and example images for transplant virtual staining project

This repository includes all test codes, models, and example images for transplant virtual staining projects. In this project, we have created 5 separate DNN models to digitally transform autofluorescence microscopic images (including DAPI, TxRed, FITC and Cy5 channels of autofluorescence) of label-free lung and heart transplant biopsies into their corresponding brightfield versions, virtually creating H&E (heart and lung), MT (heart and lung) and EVG (lung only) stains. 

You can find 5 folders for test codes and models for each organ-stain combination, and the other 5 folders starting with "Example_Imgs" including the .mat files of autofluorescence inputs, and .mat or .tif files for network outputs and histochemically stained ground truths for the same field of views.