Published 2025 | Version v1
Preprint Open

Transcriptomic profiling of shed cells enables spatial mapping of cellular turnover in human organs

  • 1. Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel
  • 2. Sheba medical center, Ramat-Gen, Israel
  • 3. Sheba Medical Center, Ramat-Gan, Israel
  • 4. Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel
  • 5. ROR icon Yale University
  • 6. ROR icon Sheba Medical Center
  • 7. ROR icon Weizmann Institute of Science

Description

Source code and data for the paper "Transcriptomic profiling of shed cells enables spatial mapping of cellular turnover in human organs".

It includes bulk RNA sequencing data of nasogastric tube fluids.

External datasets do not include data from Oliver et al 2024 and Oliveira et al 2025.

Files

external_datasets_wo_oliviera_oliver.zip

Files (1.8 GB)

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Additional details

Software

Programming language
Python, MATLAB