Description

MeTAline, is a snakemake pipeline for metagenomics analysis. MeTAline, facilitates an efficient workflow to preprocess short reads metagenomics data: from read trimming and filtering, through host read subtraction to taxonomic classification using both k-mer and gene marker-based approaches, and functional profiling of the samples.

In this release

• Upgraded Python and Snakemake versions (Snakemake==9.6.0; Python==3.11.13)

Build from source

Docker image:

make docker-image

Singularity image

make singularity

Using pre-built Singularity image

Run meTAline with Singularity

SHA256 Checksums

eaf3872236f66701164412a522931a8fa9b36a8f3e5c475360c444350b273afc  metaline.sif