Published June 17, 2025
| Version 1.3
Dataset
Open
Easy genomic regions for short-read variant calling
Creators
Description
Panmask easy regions:
- pm151a.easy: excluding 151-mers occurring ≥1.01n times in the pangenome, where n is the number of genomes.
- pm151b.easy: further excluding low-complexity regions (LCRs) longer than 18bp identified by SDUST
- pm401a.easy: 401-mers. Not well evaluated.
- pm401b.easy: excluding LCRs longer than 30bp
They exclude all assembly gaps and non-chromosomal contigs. See panmask for details.
Files
Files
(35.0 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:78ea118a3e97ab8c6a3dc51d3b02d45b
|
2.4 MB | Download |
|
md5:0d1efde1ebd3ce3d8d49097530343d8a
|
9.2 MB | Download |
|
md5:6784264aefd34985180ecf137c8c7fa7
|
706.1 kB | Download |
|
md5:1f0205168da0ad9ac46e9b8d8e9e25fb
|
5.4 MB | Download |
|
md5:76ecce087dc66938dc6a91ab56cd588f
|
2.3 MB | Download |
|
md5:69dd49bfc77b612a6c72b55a7111e4c9
|
9.1 MB | Download |
|
md5:1047f01397bc96e72d8149ae0609826b
|
667.9 kB | Download |
|
md5:193c3ea9ff2e25b8a37cd0be8a74cfa5
|
5.2 MB | Download |
Additional details
Related works
- Is derived from
- Dataset: 10.5281/zenodo.13948741 (DOI)
- Is described by
- Software: https://github.com/lh3/panmask (URL)