Published January 25, 2021
| Version v1.1.1
Dataset
Open
The CRyPTIC Consortium Dataset
Authors/Creators
-
1.
University of Oxford
Description
This dataset contains the high-level data tables produced by the CRyPTIC Consortium following the first data freeze in April 2020. It contains information on a large number of M. tuberculosis complex samples that were collected and collated by the project. In total
- 77,860 samples with whole-genome sequencing (WGS) information (all derived from short-reads)
- 50,378 samples with at least one phenotypic drug susceptibility test (pDST) result.
- Of these 17,172 were collected by CRyPTIC and had the minimum inhibitory concentrations of 13 antibiotics measured using either a UKMYC5 or UKMYC6 96-well broth microdilution plate.
- 41,130 samples have both WGS and pDST data.
- Of these 15,211 were collected by CRyPTIC
For simplicity all data tables are made available as comma separated values (CSV) files. Each has been gzipped to save space.
Files
DATA_SCHEMA.pdf
Files
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Additional details
Funding
- Wellcome Trust
- The CRyPTIC Consortium 200205/Z/15/Z
- Bill & Melinda Gates Foundation
- The CRyPTIC Consortium OPP1133541