Dockstore

There is a newer version of the record available.

Published June 12, 2025 | Version atac_develop
Software Open

github.com/broadinstitute/warp/atac

Authors/Creators

Description

Processing for single-cell ATAC-seq data from the level of raw fastq reads. This is the first step of the multiome pipeline. ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) is a technique used in molecular biology to assess genome-wide chromatin accessibility. This pipeline processes 10x Genomics Multiome ATAC FASTQ files.

Files

github.com-broadinstitute-warp-atac_atac_develop.zip

Files (22.1 kB)

Name Size
md5:696a305438eca13609a79d982370fefe
22.1 kB Preview Download

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.15653200 (URL)
https://dockstore.org/workflows/github.com/broadinstitute/warp/atac:atac_develop (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fwarp%2Fatac/versions/atac_develop/PLAIN-WDL/descriptor/atac.wdl (URL)