Large-scale Inference of Cell Lineage Trees and Genotype Calling from Noisy Single-Cell Data Using Efficient Local Search

This repository contains all scripts and datasets used in the paper Large-scale Inference of Cell Lineage Trees and Genotype Calling from Noisy Single-Cell Data Using Efficient Local Search. The materials provided here enable reproducibility and facilitate further exploration of our methods.

Github: https://github.com/yufengwudcs/ScisTree2

Included in this archive:

• Source code and scripts used to run experiments, generate results, and evaluate accuracy metrics.

• Benchmark datasets and simulated data used in the paper.

• Instructions and configuration files for reproducing figures and tables.

• HGSOC