Published June 4, 2025
| Version v1
Dataset
Open
Data accompanying the seuFLViz R package for interactive exploratory data analysis of single cell datasets as seurat objects
Authors/Creators
-
1.
University of Colorado Anschutz Medical Campus
-
2.
Children's Hospital of Los Angeles
-
3.
University of Southern California
Description
Data accompanying the seuFLViz R package for interactive exploratory data analysis of single cell datasets as seurat objects.
Data collected by Dominic Shayler and described in:
1. Shayler DW, Stachelek K, Cambier L, Lee S, Bai J, Reid MW, Weisenberger DJ, Bhat B, Aparicio JG, Kim Y, Singh M, Bay M, Thornton ME, Doyle EK, Fouladian Z, Erberich SG, Grubbs BH, Bonaguidi MA, Craft CM, Singh HP, Cobrinik D. Identification and characterization of early human photoreceptor states and cell-state-specific retinoblastoma-related features. eLife [Internet]. eLife Sciences Publications Limited; 2024 Nov 22 [cited 2024 Dec 20];13.
Some raw data available in GEO: GSE207802
Files
Files
(124.3 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:bafd901d7681f5728015fb48f24a71c3
|
6.0 MB | Download |
|
md5:a53ec264910f023cd45e29232264197a
|
517 Bytes | Download |
|
md5:fea7f56ebb25536e7e706a3ed4d1f9db
|
351.0 kB | Download |
|
md5:a18ba62e5b22a3436943911acc247008
|
39.6 kB | Download |
|
md5:e4389cc71ac73a28a2695d6e00b5bc32
|
10.6 MB | Download |
|
md5:5287daeb40f37b7fb1c7974199786c90
|
7.4 MB | Download |
|
md5:54df419aaff2b73074a7e7d2beff90a3
|
49.8 kB | Download |
|
md5:c718c8d6a5cb64746c9c3ba3f47d014a
|
1.1 kB | Download |
|
md5:d4533f042b8597f884d34376c691fe06
|
151.0 kB | Download |
|
md5:42daa65c88224c2a6b3d740c0c3b9f24
|
50.9 kB | Download |
|
md5:01b4b870f02a012f3f59b6c3ef97429d
|
3.0 kB | Download |
|
md5:570f82e15aa5cd015028322628c07c76
|
66.9 MB | Download |
|
md5:8e6050158d905b0b69516c6f02145014
|
16.2 kB | Download |
|
md5:9a3c1844bb449585509582a5f321ab20
|
32.5 MB | Download |
|
md5:ec3d0954155389a4c9352e262f75d282
|
140.9 kB | Download |
|
md5:b1419eef5e2bdbe5f19ddddd652085f1
|
11.9 kB | Download |
Additional details
Related works
- Has part
- Publication: 10.1101/2025.05.27.656486 (DOI)
- Is published in
- Publication: 10.7554/eLife.101918.1 (DOI)
Funding
- National Institutes of Health
- R01EY026661
- National Institutes of Health
- R01CA137124
- Research to Prevent Blindness
- Knights Templar Eye Foundation
Software
- Repository URL
- https://github.com/cobriniklab/seuFLViz
- Programming language
- R
- Development Status
- Active
References
- 1. Shayler DW, Stachelek K, Cambier L, Lee S, Bai J, Reid MW, Weisenberger DJ, Bhat B, Aparicio JG, Kim Y, Singh M, Bay M, Thornton ME, Doyle EK, Fouladian Z, Erberich SG, Grubbs BH, Bonaguidi MA, Craft CM, Singh HP, Cobrinik D. Identification and characterization of early human photoreceptor states and cell-state-specific retinoblastoma-related features. eLife [Internet]. eLife Sciences Publications Limited; 2024 Nov 22 [cited 2024 Dec 20];13.
- 1. Stachelek K, Bhat B, Cobrinik D. Chevreul: An R Bioconductor Package for Exploratory Analysis of Full-Length Single Cell Sequencing [Internet]. bioRxiv; 2025 [cited 2025 Jun 4]. p. 2025.05.27.656486.