TheDongLab/EVscope: v1.0.1

v1.0.1: EVscope source code + HG38 annotation reference files

Code changes:
- Fix Step 18: use merged SAF for meta-gene featureCounts (eliminates cross-region double-counting)
- Remove ENCODE blacklist from meta-gene counting
- Fix undefined variable in Step 27 HTML report
- Fix hardcoded thread counts in Step 26
- Remove unused imports, translate Chinese comments

Annotation files (EVscope_annotations_HG38.zip, 406 MB):
35 pre-built genome annotation files for HG38 (GENCODE v45):
- Gene annotations: GTF, RefFlat, gene ID mapping (3,659,642 RNAs, 20 biotypes)
- Meta-gene regions: merged SAF + 7 BED files (5'UTR, 3'UTR, exon, intron, promoter, downstream, intergenic)
- RNA type BED: protein-coding, lncRNA, miRNA, snoRNA, snRNA, tRNA, rRNA, piRNA, pseudogenes, LINE, SINE, ERV
- ENCODE blacklist v2, rRNA interval list
- Total uncompressed: 5.4 GB