ReSurfEMG

Commits

• 2651168: Reverse changelog order (rspwarnaarUT) #363
• 6282d0f: class AdichtReader added (t_barth) #365
• ce76e11: Format adicht_reader.py docstring (Rob Warnaar) #365
• fe21329: Move new requirements to pyproject file (Rob Warnaar) #365
• 44c3a9c: WIP Move example to notebook (Rob Warnaar) #365
• 9a989bf: Linting adicht_reader.py (Rob Warnaar) #365
• Incorporate adicht_reader in converter_functions #365 (rspwarnaarUT)
• 75b73c4: WIP Synthetic data (Rob Warnaar) #365
• fb201ae: adicht_reader sanitize documentation. Add idx (start indexing by 0, default) and ID (start indexing by 1) options (rspwarnaarUT) #365
• 98154cc: Update example adicht_reader notebook (rspwarnaarUT) #365
• 159a585: adi only available on windows (rspwarnaarUT) #365
• daaf118: WIP implement converter_functions tests (rspwarnaarUT) #365
• 6209217: WIP Streamline adichtreader functionality (rspwarnaarUT) #365
• c5598bc: record_id vs record_idx fix and linting (rspwarnaarUT) #365
• d928fda: Update adicht example (rspwarnaarUT) #365
• 43c1226: Add multi fs warnings (rspwarnaarUT) #365
• 930f4e5: Also test on win and osx when PR to main (rspwarnaarUT) #365
• a3865a9: Fix github action venv (rspwarnaarUT) #365
• 93940b9: Fix osx windows tests try 3 (rspwarnaarUT) #365
• f1828d2: Fix osx win sanity try 4 (rspwarnaarUT) #365
• 6f8b023: Fix win osx test try 5 (rspwarnaarUT) #365
• 9fcb0f9: Fix sphinx formatting errors (rspwarnaarUT) #365
• dea4322: Mock adi in sphinx docs (rspwarnaarUT) #365
• 30b5d9e: Fix sphinx autodoc (rspwarnaarUT) #365
• 3b30ee2: Add idx to adicht metadata (rspwarnaarUT) #365
• 09340a5: Prevent adicht_reader import on other plat (rspwarnaarUT) #365
• 5243219: Fix linting (rspwarnaarUT) #365
• aedec42: Fix Sphinx to also ignore adicht_reader (rspwarnaarUT) #365
• 3109783: Ignore adicht_reader in sphinx (rspwarnaarUT) #365
• f0cff49: Alternatively, throw error at AdichtReader use rather than import (rspwarnaarUT) #365
• 1455324: Fix sanitize valid_idxs (rspwarnaarUT) #367
• 482ccdc: Fix option sorting in ipy_widgets (rspwarnaarUT) #367
• e3c33ae: Update data_classes documentation (rspwarnaarUT) #367
• d439e42: Fix peakset class to not break at duplicate peak_idx (as of link_peak_set) (rspwarnaarUT) #367
• b7720eb: Fix availability of data in linux test (rspwarnaarUT) #368
• af32c57: Add verbose to poly5reader (rspwarnaarUT) #368
• ca7d40d: Fix dataflipping from df to numpy (rspwarnaarUT) #368
• 04daaab: Update basic pipeline for EMG to ventilator breath relation (rspwarnaarUT) #368
• 63b0fc6: Remove environment.yml to prevent confusion (rspwarnaarUT) #368
• 85ced96: Update changelog (rspwarnaarUT) #368
• 0b97d08: Fix url to readthedocs (rspwarnaarUT) #368
• ca9522a: poly case senstive (rspwarnaarUT) #368
• 6761c9d: Minor bug fixes (rspwarnaarUT) #368
• 9d63fbf: Fix not in convention error (rspwarnaarUT) #368
• 9ea5bc0: Update and prettify sphinx documentation (rspwarnaarUT) #368
• 927f46c: Add get_config method to see all configured paths (rspwarnaarUT) #368
• 6a4f55c: Fix repo_root is none error in config (rspwarnaarUT) #368
• 5d39775: Fix linting (rspwarnaarUT) #368
• c323599: Fix linting error (rspwarnaarUT) #368
• 8c0ae04: Split ECG detection and removal in data classes (rspwarnaarUT) #368
• 06ed834: Prevent duplicate method with run and baseline (rspwarnaarUT) #368
• 5188e0f: Fix read the docs url (rspwarnaarUT) #368
• 488a9bc: Url fix in toml file (rspwarnaarUT) #368
• a2e16e2: Convert timeseries y_ data attributes to dict and allow for dict-indexing according to these names (rspwarnaarUT) #368
• e26a98f: Convert TimeSeries signal_type to signal_io=(input, output) to capture both signal input and (rspwarnaarUT) #368
• aa78300: Add .to_numpy method to TimeSeriesGroup (rspwarnaarUT) #368
• afd015a: Add iter method to TimeSeries (rspwarnaarUT) #368
• f5187ca: Fix Sphinx (rspwarnaarUT) #368
• 79508be: add signal_io option to detect_emg_breaths (rspwarnaarUT) #368
• 2d3815e: Update signal_io detect_emg_breaths (rspwarnaarUT) #368
• 5d76b2a: Fix tests with new dynamic signal naming (rspwarnaarUT) #368
• ed4b755: Fix ETP calculate with dynamic naming (rspwarnaarUT) #368
• 8edc988: Add ecg to test parameter names (rspwarnaarUT) #368
• aa5b835: Fix Sphinx (rspwarnaarUT) #368