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Published May 29, 2025 | Version 2025_05
Software Open

imgag/ngs-bits: 2025_05

Authors/Creators

  • 1. Institute of Medical Genetics and Applied Genomics
  • 2. Institut für Medizinische Genetik und Angewandte Genomik
  • 3. @GC-HBOC @imgag
  • 4. University of Tübingen
  • 5. @MHH-Humangenetik
  • 6. Avera Cancer Institute

Description

Changes:

  • BedLiftOver: added parameter '-merged_output'
  • GenesToTranscripts: added mode 'mane_select'
  • NGSDExportSamples: added parameter '-no_resequencing' and added preset for germline samples
  • SampleGender: renamed parameter '-include_single_end_reads' to '-long_read'
  • SampleSimilarity: renamed parameter '-include_single_end_reads' to '-long_read'
  • VariantAnnotateFrequency: added parameter '-long_read'
  • VcfCalculatePRS: added parameter '-long_read'
  • VcfAnnotateMaxEntScan: Fixed bug in SWA alternative sequence generation and using 'min_score' for comp scores as well.
  • NGSD:
    • changed calling_date fields in all callset tables from DATETIME to DATETIME
  • general bug fixes and more Qt6 adaptations

Full Changelog at: https://github.com/imgag/ngs-bits/compare/2025_03...2025_05

Note: Please do not use the auto-generated 'Source code' packages - they will not work!

Files

imgag/ngs-bits-2025_05.zip

Files (199.8 MB)

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md5:49f3a678ad9434e0dee108e733166af7
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Additional details

Related works

Is supplement to
Software: https://github.com/imgag/ngs-bits/tree/2025_05 (URL)

Software

Repository URL
https://github.com/imgag/ngs-bits