There is a newer version of the record available.

Published May 28, 2025 | Version v2025-05-28

obophenotype/uberon: v2025-05-28

  • 1. Lawrence Berkeley National Laboratory
  • 2. University of Cambridge
  • 3. Semanticly
  • 4. EBI-EMBL
  • 5. Natural History Museum, University of Oslo
  • 6. www.virtualflybrain.org
  • 7. Critical Path Institute
  • 8. @RENCI
  • 9. ARC Semantics
  • 10. University of Florida
  • 11. Biovista Inc
  • 12. LUMC (ex EMBL) @zellerlab
  • 13. RWTH Aachen University
  • 14. Agilent Technologies
  • 15. Northeastern University

Description

<details> <summary>Text definitions changed: 5</summary>

| Term | Old Text Definition | New Text Definition | ----|----|----| | insect prothoracic leg (UBERON:6004663) | Leg of the prothoracic segment. | Leg of the insect prothoracic segment. | | foramen secundum (UBERON:0006678) | A foramen in the septum secundum. | The foramen secundum is an opening in the septum primum, a precursor to the interatrial septum of the human heart. It is formed at a later developmental stage than the foramen primum. Its location is also different relative to the site of the foramen primum in the septum primum. | | common hepatic artery (UBERON:0005436) | In anatomy, the common hepatic artery is a short blood vessel that supplies oxygenated blood to the liver, pylorus (a part of the stomach), duodenum (a part of the small intestine) and pancreas. It arises from the celiac artery and has the following branches:. | In anatomy, the common hepatic artery is a short blood vessel that supplies oxygenated blood to the liver, pylorus (a part of the stomach), duodenum (a part of the small intestine), pancreas, and gall bladder. It arises from the celiac artery and has the following branches: the hepatic artery proper, the gastroduodenal artery and the right gastric artery. | | cardiac septum (UBERON:0002099) | The thin membranous structure between the two heart atria or the thick muscular structure between the two heart ventricles. | The thin membranous structure between parts of the heart, including the atria, ventricles, and outflow tract. | | insect leg (UBERON:0005895) | The walking appendages of each segment of the ventral adult external thorax[FBbt]. A leg derived from an imaginal disc[GO]. | An appendage of an insect thoracic segment. It is primarily used for locomotion but may have additional functions in some species, such as digging, grasping, grooming, or silk production (Chapman 1998). |

</details>

<details> <summary>Classes added: 26</summary>

| Term | ----| | left inferior pulmonary vein (UBERON:8920017) | | caecum lamina propria (UBERON:8600139) | | transverse colon epithelium (UBERON:7770006) | | medial prefrontal cortex (UBERON:4450000) | | insect mesothoracic leg (UBERON:8450007) | | ascending colon epithelium (UBERON:7770005) | | corpus hemorrhagicum (UBERON:8600129) | | descending colon lamina propria (UBERON:8600135) | | descending colon epithelium (UBERON:7770007) | | stellate vein of kidney (UBERON:8920011) | | sigmoid colon lamina propria (UBERON:8600136) | | anterior ciliary vein (UBERON:8920013) | | left bronchial vein (UBERON:8920014) | | left superior pulmonary vein (UBERON:8920019) | | sigmoid colon epithelium (UBERON:7770008) | | left marginal vein (UBERON:8920010) | | right inferior pulmonary vein (UBERON:8920016) | | stomach lamina propria (UBERON:8600138) | | right superior pulmonary vein (UBERON:8920018) | | insect metathoracic leg (UBERON:8450008) | | airway hillock (UBERON:8910024) | | rectum lamina propria (UBERON:8600140) | | right bronchial vein (UBERON:8920015) | | ascending colon lamina propria (UBERON:8600134) | | segmental renal vein (UBERON:8920012) | | transverse colon lamina propria (UBERON:8600137) |

</details>

<details> <summary>Relationships added: 81</summary>

| Subject | Predicate | Object| ----|----|----| | left superior pulmonary vein (UBERON:8920019) | subClassOf (rdfs:subClassOf) | pulmonary vein (UBERON:0002016) | | ascending colon lamina propria (UBERON:8600134) | subClassOf (rdfs:subClassOf) | lamina propria of large intestine (UBERON:0011189) | | left inferior pulmonary vein (UBERON:8920017) | subClassOf (rdfs:subClassOf) | lung blood vessel (UBERON:0003512) | | transverse colon lamina propria (UBERON:8600137) | subClassOf (rdfs:subClassOf) | lamina propria of large intestine (UBERON:0011189) | | insect mesothoracic leg (UBERON:8450007) | subClassOf (rdfs:subClassOf) | insect leg (UBERON:0005895) | | left marginal vein (UBERON:8920010) | subClassOf (rdfs:subClassOf) | heart blood vessel (UBERON:0003498) | | insect prothoracic leg (UBERON:6004663) | BFO:0000050 | insect prothoracic segment (UBERON:6000017) | | right bronchial vein (UBERON:8920015) | subClassOf (rdfs:subClassOf) | thoracic vein (UBERON:0005194) | | anterior ciliary vein (UBERON:8920013) | RO:0002376 | superior ophthalmic vein (UBERON:0011192) | | left inferior pulmonary vein (UBERON:8920017) | RO:0020102 | lower lobe of left lung (UBERON:0008953) | | left bronchial vein (UBERON:8920014) | RO:0002376 | accessory hemiazygos vein (UBERON:0006665) | | transverse colon epithelium (UBERON:7770006) | subClassOf (rdfs:subClassOf) | colonic epithelium (UBERON:0000397) | | right bronchial vein (UBERON:8920015) | subClassOf (rdfs:subClassOf) | bronchial vein (UBERON:0001592) | | foramen secundum (UBERON:0006678) | BFO:0000050 | atrial septum primum (UBERON:0004154) | | caecum lamina propria (UBERON:8600139) | subClassOf (rdfs:subClassOf) | lamina propria of large intestine (UBERON:0011189) | | rectum lamina propria (UBERON:8600140) | subClassOf (rdfs:subClassOf) | lamina propria of large intestine (UBERON:0011189) | | airway hillock (UBERON:8910024) | subClassOf (rdfs:subClassOf) | simple squamous epithelium (UBERON:0000487) | | insect metathoracic leg (UBERON:8450008) | subClassOf (rdfs:subClassOf) | insect leg (UBERON:0005895) | | corpus hemorrhagicum (UBERON:8600129) | RO:0002203 | corpus luteum (UBERON:0002512) | | insect metathoracic leg (UBERON:8450008) | BFO:0000050 | insect metathoracic segment (UBERON:6000019) | | left superior pulmonary vein (UBERON:8920019) | RO:0020102 | upper lobe of left lung (UBERON:0008952) | | airway hillock (UBERON:8910024) | BFO:0000051 | CL:4030023 | | medial prefrontal cortex (UBERON:4450000) | BFO:0000050 | prefrontal cortex (UBERON:0000451) | | descending colon epithelium (UBERON:7770007) | subClassOf (rdfs:subClassOf) | colonic epithelium (UBERON:0000397) | | descending colon epithelium (UBERON:7770007) | BFO:0000050 | descending colon (UBERON:0001158) | | sigmoid colon lamina propria (UBERON:8600136) | subClassOf (rdfs:subClassOf) | lamina propria of large intestine (UBERON:0011189) | | left superior pulmonary vein (UBERON:8920019) | subClassOf (rdfs:subClassOf) | thoracic vein (UBERON:0005194) | | corpus hemorrhagicum (UBERON:8600129) | RO:0002202 | mature ovarian follicle (UBERON:0003982) | | right inferior pulmonary vein (UBERON:8920016) | subClassOf (rdfs:subClassOf) | pulmonary vein (UBERON:0002016) | | corpus hemorrhagicum (UBERON:8600129) | BFO:0000050 | ovary (UBERON:0000992) | | insect leg (UBERON:0005895) | BFO:0000050 | insect thoracic segment (UBERON:6000016) | | corpus hemorrhagicum (UBERON:8600129) | subClassOf (rdfs:subClassOf) | mesoderm-derived structure (UBERON:0004120) | | right bronchial vein (UBERON:8920015) | RO:0002376 | azygos vein (UBERON:0001594) | | right bronchial vein (UBERON:8920015) | subClassOf (rdfs:subClassOf) | lung blood vessel (UBERON:0003512) | | ascending colon epithelium (UBERON:7770005) | subClassOf (rdfs:subClassOf) | colonic epithelium (UBERON:0000397) | | stomach lamina propria (UBERON:8600138) | BFO:0000050 | stomach (UBERON:0000945) | | anterior ciliary vein (UBERON:8920013) | subClassOf (rdfs:subClassOf) | vein (UBERON:0001638) | | segmental renal vein (UBERON:8920012) | RO:0002376 | renal vein (UBERON:0001140) | | left marginal vein (UBERON:8920010) | RO:0020102 | heart left ventricle (UBERON:0002084) | | transverse colon epithelium (UBERON:7770006) | BFO:0000050 | transverse colon (UBERON:0001157) | | right inferior pulmonary vein (UBERON:8920016) | subClassOf (rdfs:subClassOf) | thoracic vein (UBERON:0005194) | | caecum lamina propria (UBERON:8600139) | BFO:0000050 | caecum (UBERON:0001153) | | anterior ciliary vein (UBERON:8920013) | RO:0020102 | ciliary body (UBERON:0001775) | | ascending colon lamina propria (UBERON:8600134) | BFO:0000050 | ascending colon (UBERON:0001156) | | right superior pulmonary vein (UBERON:8920018) | RO:0020102 | middle lobe of right lung (UBERON:0002174) | | ascending colon epithelium (UBERON:7770005) | BFO:0000050 | ascending colon (UBERON:0001156) | | right superior pulmonary vein (UBERON:8920018) | subClassOf (rdfs:subClassOf) | thoracic vein (UBERON:0005194) | | left inferior pulmonary vein (UBERON:8920017) | subClassOf (rdfs:subClassOf) | pulmonary vein (UBERON:0002016) | | left bronchial vein (UBERON:8920014) | subClassOf (rdfs:subClassOf) | lung blood vessel (UBERON:0003512) | | descending colon lamina propria (UBERON:8600135) | subClassOf (rdfs:subClassOf) | lamina propria of large intestine (UBERON:0011189) | | stellate vein of kidney (UBERON:8920011) | subClassOf (rdfs:subClassOf) | renal cortex vein (UBERON:0005269) | | sigmoid colon epithelium (UBERON:7770008) | BFO:0000050 | sigmoid colon (UBERON:0001159) | | right inferior pulmonary vein (UBERON:8920016) | subClassOf (rdfs:subClassOf) | lung blood vessel (UBERON:0003512) | | right superior pulmonary vein (UBERON:8920018) | RO:0020102 | upper lobe of right lung (UBERON:0002170) | | rectum lamina propria (UBERON:8600140) | BFO:0000050 | rectum (UBERON:0001052) | | left bronchial vein (UBERON:8920014) | subClassOf (rdfs:subClassOf) | thoracic vein (UBERON:0005194) | | insect mesothoracic leg (UBERON:8450007) | BFO:0000050 | insect mesothoracic segment (UBERON:6000018) | | left superior pulmonary vein (UBERON:8920019) | subClassOf (rdfs:subClassOf) | lung blood vessel (UBERON:0003512) | | left bronchial vein (UBERON:8920014) | subClassOf (rdfs:subClassOf) | bronchial vein (UBERON:0001592) | | left superior pulmonary vein (UBERON:8920019) | RO:0020102 | lingula of left lung (UBERON:0008954) | | segmental renal vein (UBERON:8920012) | subClassOf (rdfs:subClassOf) | vein of abdomen (UBERON:0013126) | | stellate vein of kidney (UBERON:8920011) | RO:0002376 | renal interlobular vein (UBERON:0005168) | | left marginal vein (UBERON:8920010) | RO:0002376 | great vein of heart (UBERON:0006958) | | left inferior pulmonary vein (UBERON:8920017) | subClassOf (rdfs:subClassOf) | thoracic vein (UBERON:0005194) | | right inferior pulmonary vein (UBERON:8920016) | RO:0020102 | lower lobe of right lung (UBERON:0002171) | | descending colon lamina propria (UBERON:8600135) | BFO:0000050 | descending colon (UBERON:0001158) | | segmental renal vein (UBERON:8920012) | subClassOf (rdfs:subClassOf) | renal venous blood vessel (UBERON:0014401) | | left marginal vein (UBERON:8920010) | subClassOf (rdfs:subClassOf) | thoracic vein (UBERON:0005194) | | left bronchial vein (UBERON:8920014) | RO:0002376 | left superior intercostal vein (UBERON:0012195) | | right superior pulmonary vein (UBERON:8920018) | subClassOf (rdfs:subClassOf) | pulmonary vein (UBERON:0002016) | | airway hillock (UBERON:8910024) | subClassOf (rdfs:subClassOf) | tracheobronchial epithelium (UBERON:0008397) | | sigmoid colon lamina propria (UBERON:8600136) | BFO:0000050 | sigmoid colon (UBERON:0001159) | | granulosa cell layer (UBERON:0005170) | subClassOf (rdfs:subClassOf) | reproductive structure (UBERON:0005156) | | sigmoid colon epithelium (UBERON:7770008) | subClassOf (rdfs:subClassOf) | colonic epithelium (UBERON:0000397) | | transverse colon lamina propria (UBERON:8600137) | BFO:0000050 | transverse colon (UBERON:0001157) | | lamina propria of fundus of stomach (UBERON:0016511) | subClassOf (rdfs:subClassOf) | stomach lamina propria (UBERON:8600138) | | stomach lamina propria (UBERON:8600138) | subClassOf (rdfs:subClassOf) | gastrointestinal system lamina propria (UBERON:0004780) | | anterior ciliary vein (UBERON:8920013) | BFO:0000050 | eye (UBERON:0000970) | | medial prefrontal cortex (UBERON:4450000) | subClassOf (rdfs:subClassOf) | regional part of brain (UBERON:0002616) | | insect leg (UBERON:0005895) | RO:0002162 | NCBITaxon:50557 | | right superior pulmonary vein (UBERON:8920018) | subClassOf (rdfs:subClassOf) | lung blood vessel (UBERON:0003512) |

</details>

<details> <summary>Text definitions added: 28</summary>

| Term | New Text Definition | ----|----| | transverse colon lamina propria (UBERON:8600137) | The lamina propria that underlies the epithelial lining of the transverse colon. | | stomach lamina propria (UBERON:8600138) | The lamina propria that underlies the epithelial lining of the stomach. | | insect mesothoracic leg (UBERON:8450007) | Leg of the insect mesothoracic segment. | | left inferior pulmonary vein (UBERON:8920017) | A pulmonary vein that drains blood from the inferior lobe of the left lung. | | right bronchial vein (UBERON:8920015) | A bronchial vein that drains blood from the bronchi into the azygos vein. | | stellate vein of kidney (UBERON:8920011) | A vein that drains blood from the most superficial zones of the renal cortex. Groups of stellate veins are arranged in a star-like pattern, converging centrally to drain into an interlobular vein. | | segmental renal vein (UBERON:8920012) | A vein that is a tributary of the renal vein and drains blood from a segment of the kidney. | | anterior ciliary vein (UBERON:8920013) | A vein that is a tributary of the superior ophthalmic vein and drains blood from the ciliary body of the eye. | | left superior pulmonary vein (UBERON:8920019) | A pulmonary vein that drains blood from the superior lobe and lingula of the left lung. | | right superior pulmonary vein (UBERON:8920018) | A pulmonary vein that drains blood from the superior and middle lobes of the right lung. | | ascending colon epithelium (UBERON:7770005) | An epithelial layer that lines the ascending colon. | | airway hillock (UBERON:8910024) | A region of squamous epithelium found in the tracheobronchial tree - continuous with the tracheobronchial epithelium. | | descending colon lamina propria (UBERON:8600135) | The lamina propria that underlies the epithelial lining of the descending colon. | | sigmoid colon epithelium (UBERON:7770008) | An epithelial layer that lines the sigmoid colon. | | left bronchial vein (UBERON:8920014) | A bronchial vein that drains blood from the bronchi into the accessory hemiazygos vein or the left superior intercostal vein. | | corpus hemorrhagicum (UBERON:8600129) | A transient, mesoderm-derived structure in the ovary that forms immediately after the rupture of a mature ovarian follicle during ovulation. It is formed by bleeding of small blood vessels in the follicle wall as the follicle collapses, resulting in a blood-filled center that rapidly clots. This structure develops into the corpus luteum. | | ascending colon lamina propria (UBERON:8600134) | The lamina propria that underlies the epithelial lining of the ascending colon. | | right inferior pulmonary vein (UBERON:8920016) | A pulmonary vein that drains blood from the inferior lobe of the right lung. | | sigmoid colon lamina propria (UBERON:8600136) | The lamina propria that underlies the epithelial lining of the sigmoid colon. | | insular cortex (UBERON:0034891) | The insular cortex (also insula and insular lobe) is a portion of the cerebral cortex folded deep within the lateral sulcus (the fissure separating the temporal lobe from the parietal and frontal lobes) within each hemisphere of the mammalian brain. It is the primary gustatory cortex and is involved in sensorimotor and somatosensory as well as socioemotional functions. | | insect metathoracic leg (UBERON:8450008) | Leg of the insect metathoracic segment. | | descending colon epithelium (UBERON:7770007) | An epithelial layer that lines the descending colon. | | rectum lamina propria (UBERON:8600140) | The lamina propria that underlies the epithelial lining of the rectum. | | left marginal vein (UBERON:8920010) | A vein that is a tributary of the great cardiac vein (left coronary vein) and drains blood from the left ventricle of the heart. It courses with the left marginal artery as it travels superiorly along the left cardiac border. | | Brodmann (1909) area 9 (UBERON:0013540) | Brodmann area 9, or BA9, refers to a cytoarchitecturally defined portion of the frontal cortex in the brain of humans and other primates. It contributes to the dorsolateral and medial prefrontal cortex and plays a role in executive functions such as working memory, planning, inhibition, decision-making, and reasoning. Its cytoarchitecture is referred to as granular due to the concentration of granule cells in layer IV. Its internal pyramidal layer (V) is divisible into two sublayers, an outer layer 5a of densely distributed medium-size ganglion cells that partially merges with layer IV, and an inner, clearer, cell-poor layer 5b; the pyramidal cells of sublayer 3b of the external pyramidal layer (III) are smaller and sparser in distribution; the external granular layer (II) is narrow, with small numbers of sparsely distributed granule cells. | | medial prefrontal cortex (UBERON:4450000) | The medial prefrontal cortex (mPFC) is a subdivision of the prefrontal cortex composed of BA12, BA25, and anterior cingulate cortex: BA32, BA33, BA24. Within this region is the dorsal nexus, which interconnects multiple brain networks and plays a role in maintenance and manipulation of information (working memory), as well as supporting the control of cognitive functions such as emotion processing and regulation, memory, decision making, and conflict resolution. | | caecum lamina propria (UBERON:8600139) | The lamina propria that underlies the epithelial lining of the caecum. | | transverse colon epithelium (UBERON:7770006) | An epithelial layer that lines the transverse colon. |

</details>

<details> <summary>Synonyms added: 51</summary>

| Term | New Synonym | Predicate | ----|----|----| | ascending colon epithelium (UBERON:7770005) | ascending colon epithelial layer | oio:hasExactSynonym | | transverse colon lamina propria (UBERON:8600137) | lamina propria of transverse colon | oio:hasExactSynonym | | transverse colon lamina propria (UBERON:8600137) | transverse colonic lamina propria | oio:hasExactSynonym | | ascending colon lamina propria (UBERON:8600134) | lamina propria of ascending colon | oio:hasExactSynonym | | insect metathoracic leg (UBERON:8450008) | insect third leg | oio:hasExactSynonym | | ascending colon lamina propria (UBERON:8600134) | ascending colonic lamina propria | oio:hasExactSynonym | | caecum lamina propria (UBERON:8600139) | lamina propria of cecum | oio:hasExactSynonym | | descending colon lamina propria (UBERON:8600135) | lamina propria of descending colon | oio:hasExactSynonym | | insect metathoracic leg (UBERON:8450008) | insect T3 leg | oio:hasExactSynonym | | right superior pulmonary vein (UBERON:8920018) | Right superior pulmonary venous tree | oio:hasExactSynonym | | left inferior pulmonary vein (UBERON:8920017) | Left inferior pulmonary venous tree | oio:hasExactSynonym | | rectum lamina propria (UBERON:8600140) | rectal lamina propria | oio:hasExactSynonym | | stomach lamina propria (UBERON:8600138) | gastric lamina propria | oio:hasExactSynonym | | left inferior pulmonary vein (UBERON:8920017) | Left lower lobar vein | oio:hasExactSynonym | | insect mesothoracic leg (UBERON:8450007) | insect middle leg | oio:hasExactSynonym | | transverse colon epithelium (UBERON:7770006) | epithelial tissue of transverse colon | oio:hasExactSynonym | | caecum lamina propria (UBERON:8600139) | lamina propria of caecum | oio:hasExactSynonym | | descending colon epithelium (UBERON:7770007) | epithelium of descending colon | oio:hasExactSynonym | | insect mesothoracic leg (UBERON:8450007) | insect T2 leg | oio:hasExactSynonym | | caecum lamina propria (UBERON:8600139) | cecum lamina propria | oio:hasExactSynonym | | descending colon epithelium (UBERON:7770007) | descending colon epithelial layer | oio:hasExactSynonym | | sigmoid colon epithelium (UBERON:7770008) | sigmoid colon epithelial layer | oio:hasExactSynonym | | sigmoid colon epithelium (UBERON:7770008) | epithelial tissue of sigmoid colon | oio:hasExactSynonym | | sigmoid colon lamina propria (UBERON:8600136) | lamina propria of sigmoid colon | oio:hasExactSynonym | | insect prothoracic leg (UBERON:6004663) | insect first leg | oio:hasExactSynonym | | sigmoid colon epithelium (UBERON:7770008) | epithelial layer of sigmoid colon | oio:hasExactSynonym | | descending colon epithelium (UBERON:7770007) | epithelial layer of descending colon | oio:hasExactSynonym | | sigmoid colon epithelium (UBERON:7770008) | epithelium of sigmoid colon | oio:hasExactSynonym | | transverse colon epithelium (UBERON:7770006) | epithelial layer of transverse colon | oio:hasExactSynonym | | ascending colon epithelium (UBERON:7770005) | epithelial tissue of ascending colon | oio:hasExactSynonym | | insect prothoracic leg (UBERON:6004663) | insect foreleg | oio:hasExactSynonym | | corpus hemorrhagicum (UBERON:8600129) | CH | oio:hasRelatedSynonym | | medial prefrontal cortex (UBERON:4450000) | mPFC | oio:hasExactSynonym | | ascending colon epithelium (UBERON:7770005) | epithelium of ascending colon | oio:hasExactSynonym | | insect prothoracic leg (UBERON:6004663) | insect T1 leg | oio:hasExactSynonym | | ascending colon epithelium (UBERON:7770005) | epithelial layer of ascending colon | oio:hasExactSynonym | | right inferior pulmonary vein (UBERON:8920016) | Right inferior pulmonary venous tree | oio:hasExactSynonym | | insect metathoracic leg (UBERON:8450008) | insect hindleg | oio:hasExactSynonym | | right inferior pulmonary vein (UBERON:8920016) | Right lower lobar vein | oio:hasExactSynonym | | rectum lamina propria (UBERON:8600140) | lamina propria of rectum | oio:hasExactSynonym | | stomach lamina propria (UBERON:8600138) | lamina propria of stomach | oio:hasExactSynonym | | transverse colon epithelium (UBERON:7770006) | transverse colon epithelial layer | oio:hasExactSynonym | | stellate vein of kidney (UBERON:8920011) | Set of stellate veins of kidney | oio:hasExactSynonym | | insect leg (UBERON:0005895) | imaginal disc-derived leg | oio:hasNarrowSynonym | | descending colon lamina propria (UBERON:8600135) | descending colonic lamina propria | oio:hasExactSynonym | | left superior pulmonary vein (UBERON:8920019) | Left superior pulmonary venous tree | oio:hasExactSynonym | | caecum lamina propria (UBERON:8600139) | cecal lamina propria | oio:hasExactSynonym | | descending colon epithelium (UBERON:7770007) | epithelial tissue of descending colon | oio:hasExactSynonym | | insect mesothoracic leg (UBERON:8450007) | insect second leg | oio:hasExactSynonym | | transverse colon epithelium (UBERON:7770006) | epithelium of transverse colon | oio:hasExactSynonym | | sigmoid colon lamina propria (UBERON:8600136) | sigmoid colonic lamina propria | oio:hasExactSynonym |

</details>

<details> <summary>Relationships removed: 11</summary>

| Subject| Predicate| Object| ----|----|----| | serosa of infundibulum of uterine tube (UBERON:0007181) | BFO:0000050 | conus arteriosus (UBERON:0003983) | | insect prothoracic leg (UBERON:6004663) | subClassOf (rdfs:subClassOf) | ectoderm-derived structure (UBERON:0004121) | | muscle layer of infundibulum of uterine tube (UBERON:0007182) | subClassOf (rdfs:subClassOf) | heart layer (UBERON:0005983) | | foramen secundum (UBERON:0006678) | BFO:0000050 | atrial septum secundum (UBERON:0004155) | | lamina propria of fundus of stomach (UBERON:0016511) | subClassOf (rdfs:subClassOf) | gastrointestinal system lamina propria (UBERON:0004780) | | insect prothoracic leg (UBERON:6004663) | BFO:0000050 | insect adult prothoracic segment (UBERON:6003020) | | thoracic dorsal root ganglion (UBERON:0002835) | subClassOf (rdfs:subClassOf) | thoracic ganglion (UBERON:0000961) | | granulosa cell layer (UBERON:0005170) | subClassOf (rdfs:subClassOf) | epithelium of female gonad (UBERON:0004911) | | insect leg (UBERON:0005895) | RO:0002202 | imaginal disc (UBERON:0000939) | | insect prothoracic leg (UBERON:6004663) | RO:0002202 | insect prothoracic leg disc (UBERON:6001781) | | muscle layer of infundibulum of uterine tube (UBERON:0007182) | BFO:0000050 | conus arteriosus (UBERON:0003983) |

</details>

<details> <summary>Synonyms removed: 3</summary>

| Term | Removed Synonym | ----|----| | insect prothoracic leg (UBERON:6004663) | T1 leg | | insect leg (UBERON:0005895) | imaginal disc-derived leg | | insect prothoracic leg (UBERON:6004663) | first leg |

</details>

<details> <summary>Nodes added to subset: 4</summary>

| Term | Subset | ----|----| | bile duct (UBERON:0002394) | human_reference_atlas | | intestinal villus (UBERON:0001213) | human_reference_atlas | | crypt of Lieberkuhn of large intestine (UBERON:0001984) | human_reference_atlas | | esophagus muscularis mucosa (UBERON:0004648) | human_reference_atlas |

</details>

<details> <summary>Mappings added: 9</summary>

| Subject | Predicate | Object | ----|----|----| | left inferior pulmonary vein (UBERON:8920017) | oio:hasDbXref | FMA:49913 | | left superior pulmonary vein (UBERON:8920019) | oio:hasDbXref | FMA:49916 | | right inferior pulmonary vein (UBERON:8920016) | oio:hasDbXref | FMA:49911 | | stellate vein of kidney (UBERON:8920011) | oio:hasDbXref | FMA:71635 | | left marginal vein (UBERON:8920010) | oio:hasDbXref | FMA:4708 | | right superior pulmonary vein (UBERON:8920018) | oio:hasDbXref | FMA:49914 | | left bronchial vein (UBERON:8920014) | oio:hasDbXref | FMA:4837 | | anterior ciliary vein (UBERON:8920013) | oio:hasDbXref | FMA:51798 | | right bronchial vein (UBERON:8920015) | oio:hasDbXref | FMA:4942 |

</details>

<details> <summary>Nodes removed from subset: 2</summary>

| Term | Subset | ----|----| | caecum epithelium (UBERON:0005636) | human_reference_atlas | | epithelium of crypt of Lieberkuhn of large intestine (UBERON:0022281) | human_reference_atlas |

</details>

What's Changed

  • Fix issue 3448: Add definitions for insular cortex and Brodmann area 9 by @cmungall in https://github.com/obophenotype/uberon/pull/3506
  • Fix issue #2911: Remove erroneous part_of relationships between conus arteriosus and uterine tube structures by @cmungall in https://github.com/obophenotype/uberon/pull/3508
  • Fix issue #3003: Updated cardiac septum definition by @cmungall in https://github.com/obophenotype/uberon/pull/3511
  • remove incorrct subClassOf axiom on thoracic drg by @tgbugs in https://github.com/obophenotype/uberon/pull/3477
  • Added term: medial prefrontal cortex by @cmungall in https://github.com/obophenotype/uberon/pull/3507
  • Add insect meso- and metathoracic legs. by @gouttegd in https://github.com/obophenotype/uberon/pull/3514
  • Fix truncated def by @ar-ibrahim in https://github.com/obophenotype/uberon/pull/3515
  • Fix duplicate synonym. by @gouttegd in https://github.com/obophenotype/uberon/pull/3520
  • Remove the dynamic XML catalog. by @gouttegd in https://github.com/obophenotype/uberon/pull/3518
  • Added new vasculature terms-2 by @ar-ibrahim in https://github.com/obophenotype/uberon/pull/3513
  • Adding AI actions by @cmungall in https://github.com/obophenotype/uberon/pull/3529
  • Update CLAUDE.md by @cmungall in https://github.com/obophenotype/uberon/pull/3534
  • Add COB alignment comment and seeAlso link to UBERON:0000000 by @cmungall in https://github.com/obophenotype/uberon/pull/3532
  • Updated definitions.owl by @ar-ibrahim in https://github.com/obophenotype/uberon/pull/3544
  • Fix foramen primum and foramen secundum logical definitions by @rays22 in https://github.com/obophenotype/uberon/pull/3525
  • NTR corpus hemorrhagicum by @aleixpuigb in https://github.com/obophenotype/uberon/pull/3550
  • Add lamina propria terms for gut segments by @cmungall in https://github.com/obophenotype/uberon/pull/3542
  • Add epithelium terms for colon regions by @cmungall in https://github.com/obophenotype/uberon/pull/3541
  • Change URL reference to DOI format in airway hillock definition by @cmungall in https://github.com/obophenotype/uberon/pull/3537
  • Add contributor to corpus hemorrhagicum by @aleixpuigb in https://github.com/obophenotype/uberon/pull/3552
  • Refresh imports in preparation of new Uberon release by @aleixpuigb in https://github.com/obophenotype/uberon/pull/3553
  • Release 2025-05-28 by @aleixpuigb in https://github.com/obophenotype/uberon/pull/3554

Full Changelog: https://github.com/obophenotype/uberon/compare/v2025-04-09...v2025-05-28

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obophenotype/uberon-v2025-05-28.zip

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