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Published May 28, 2025 | Version v2
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Reanalysis of PXD041414

Authors/Creators

  • 1. ROR icon Helmholtz Centre for Environmental Research
  • 2. ROR icon Technische Universität Berlin

Description

This repository contains a dataset analyzed in "De novo peptide databases enable protein-based stable isotope probing of microbial communities with up to species-level resolution".

Specifically, this repository contains the reanalysis of the protein-SIP data obtained from PXD041414 ("1% 2% 5% 25% 50% 100% 13C-labeled E. coli protein") that was published in Xiong Y, Mueller RS, Feng S, Guo X, Pan C. Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins. Microbiome. 2024;12:148

mztab files originate from Casanovo

tsv files originate from PepNet

xlsx file originates from merging Unipept and MetaProSIP output

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