Published May 27, 2025
| Version v2
Dataset
Open
AlphaFold 3 predictions of diubiquitin complexes using cysteine mutants and bonded linkers
- 1. Max Planck Institute of Biophysics
Description
Alphafold 3 predictions of PDB structures
* 5ymy
* 6isu
* 6tuv
* 6ud0
* 7keo
* 7m4n
* 7uyh
* 9avt
* 7uv5
* 8c61
* 8j1p
using standard AF3 / correlated cysteine mutations / covalent linkers, as well as
* structure of a branched polyUb chain
* rpn1 in complex with triUb
* rpn13 in complex with triUb
For processing with the scripts available at https://github.com/bio-phys/polyUb-AF, the AF3 CIF files must be converted to PDBs using the 'convert_all_cif_to_pdb.sh' VMD script found in each directory. Note that it requires 'cif2pdb.vmd'.
Files
AF-3standard.zip
Files
(14.1 GB)
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md5:79fce65a38d4a3092d904f58bb91dd8f
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3.2 GB | Preview Download |
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md5:ef94fa273ffde4acebdf4dc856f2d7b2
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md5:7cd71514d259d14dde713c079087e961
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557.3 MB | Preview Download |
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md5:c829efefaeffd9727b99a8bd9381106a
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4.0 GB | Preview Download |
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3.2 GB | Preview Download |
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176 Bytes | Download |
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md5:3ac560337b0755dca14f575c8c6d6f23
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5.2 MB | Preview Download |
Additional details
Software
- Repository URL
- https://github.com/google-deepmind/alphafold3
- Development Status
- Active