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Published May 27, 2025 | Version v1
Dataset Open

1000G reference files for PRScope

Authors/Creators

  • 1. ROR icon Central Institute of Mental Health

Description

These are the reference files required for running PRScope. The link includes 1000 Genomes (hg38) PLINK files (.bim, .bed, .fam) and variant frequency data (MAF). These resources are used for clumping during PGS calculation with PRSice-2 and for MAF-based filtering. The link also contains reference files for PGS calculation using LDpred2.

Files

Files (16.2 GB)

Name Size
md5:c71531991f5baf155258ab0fc9bd155f
16.2 GB Download

Additional details

Related works

Is supplement to
Publication: 10.1101/2025.04.29.25326656 (DOI)

Software

Repository URL
https://github.com/transbioZI/PRScope
Programming language
R , Python , Snakemake
Development Status
Active