Published May 21, 2025
| Version 25.1.0
Software
Open
fMRIPrep: a robust preprocessing pipeline for functional MRI
Authors/Creators
- 1. Department of Psychology, Stanford University
- 2. Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland
- 3. Department of Psychology, Florida International University
- 4. Neuroscience Program, University of Iowa
- 5. Montreal Neurological Institute, McGill University
- 6. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
Contributors
Researcher (53):
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Provins, Céline1
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Madison, Thomas2
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Papadopoulos, Dimitri3
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Sadil, Patrick4
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Finc, Karolina5
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Feingold, Franklin6
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Smith, Robert E.7
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Tooley, Ursula A.8
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Bhagwat, Nikhil9
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Halchenko, Yaroslav O.10
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Gau, Rémi11
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de la Vega, Alejandro12
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Schaefer, Theo A.J.13
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Urchs, Sebastian9
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Benson, Noah C.14
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Nielson, Dylan M.15
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Lurie, Daniel J.16
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Waller, Lea17
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Mentch, Jeff18
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Heinsfeld, Anibal S.19
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Jamison, Keith W.20
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Erramuzpe, Asier21
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Ye, Zhifang22
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Thompson, William H.6
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Jacoby, Nir23
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Sitek, Kevin R.18
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Amlien, Inge K.24
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Liem, Franz25
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Plunkett, Dillon26
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Nitsch, Alexander13
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Callenberg, Keith27
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Wexler, Joseph B.6
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Wang, Hao-Ting28
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Ma, Feilong10
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Rivera-Dompenciel, Adriana29
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Adebimpe, Azeez30
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Bellec, Pierre28
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Cieslak, Matthew30
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Devenyi, Grabriel A.31
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Frederick, Blaise B.32
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Gomez, Daniel E. P.33
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Groen, Iris I. A.34
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Isik, Ayse Ilkay35
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Kruper, John36
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Moodie, Craig A.6
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Naveau, Mikaël37
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Satterthwaite, Theodore D.30
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Sneve, Markus H.24
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Stojić, Hrvoje38
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Valabregue, Romain39
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Velasco, Pablo40
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Wright, Jessey6
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Ghosh, Satrajit S.41
- 1. Department of Radiology, Lausanne University Hospital and University of Lausanne
- 2. Department of Pediatrics, University of Minnesota, MN, USA
- 3. Neurospin, CEA
- 4. Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, MD, USA
- 5. Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń
- 6. Department of Psychology, Stanford University
- 7. Florey Institute of Neuroscience and Mental Health
- 8. Department of Neuroscience, University of Pennsylvania, PA, USA
- 9. Montreal Neurological Institute, McGill University
- 10. Dartmouth College: Hanover, NH, United States
- 11. Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada
- 12. University of Texas at Austin
- 13. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- 14. Department of Psychology, New York University
- 15. Machine Learning Team, National Institute of Mental Health, USA
- 16. Department of Psychology, University of California, Berkeley
- 17. Charite Universitatsmedizin Berlin, Germany
- 18. Speech & Hearing Bioscience & Technology Program, Harvard University
- 19. Child Mind Institute
- 20. Department of Radiology, Weill Cornell Medicine
- 21. Computational Neuroimaging Lab, BioCruces Health Research Institute
- 22. State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University
- 23. Department of Psychology, Columbia University
- 24. Center for Lifespan Changes in Brain and Cognition, University of Oslo
- 25. URPP Dynamics of Healthy Aging, University of Zurich
- 26. Department of Psychology, Harvard University
- 27. Department of Psychiatry, University of Pittsburgh
- 28. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
- 29. Neuroscience Program, University of Iowa
- 30. Perelman School of Medicine, University of Pennsylvania, PA, USA
- 31. Department of Psychiatry, McGill University
- 32. McLean Hospital Brain Imaging Center, MA, USA
- 33. Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen
- 34. Department of Psychology, New York University, NY, USA
- 35. Max Planck Institute for Empirical Aesthetics
- 36. Department of Psychology, University of Washington
- 37. Cyceron, UMS 3408 (CNRS - UCBN), France
- 38. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
- 39. CENIR, INSERM U1127, CNRS UMR 7225, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, F-75013, Paris, France
- 40. Center for Brain Imaging, New York University
- 41. McGovern Institute for Brain Research, MIT, MA, USA
Description
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Files
nipreps/fmriprep-25.1.0.zip
Files
(24.3 MB)
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Additional details
Related works
- Documents
- https://fmriprep.org (URL)
- Is part of
- 10.1038/s41592-018-0235-4 (DOI)
Software
- Repository URL
- https://github.com/nipreps/fmriprep