CCR Collaborative Bioinformatics Resource [CCBR]

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Published May 20, 2025 | Version v2.7.0
Software Open

RENEE: Rna sEquencing aNalysis pipElinE

Authors/Creators

  • 1. Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA

Description

  • RENEE now depends on ccbr_tools v0.4 for updated jobby & spooker utilities. (#207, @kelly-sovacool)
  • Add mmul10_108 (rhesus macaque) to list of reference genomes. (#212, @kelly-sovacool)
  • Added support for new reference genomes on biowulf:
    • mm39_M36 (#199, @kelly-sovacool)
    • mm39_M37 (#220, @kelly-sovacool)
    • hg38_48 (#220, @kelly-sovacool)
  • Fix --sif-cache example in docs. (#208, @kelly-sovacool)

Notes

Please cite RENEE as below.

Files

CCBR/RENEE-v2.7.0.zip

Files (11.1 MB)

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md5:851e1bb597efd0fddf1dfefdbaf0f6f1
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Additional details

Related works

Is supplement to
Software: https://github.com/CCBR/RENEE/tree/v2.7.0 (URL)

Software

Repository URL
https://github.com/CCBR/RENEE