Barking Up the Right Tree: RNA-seq Data for Immune Checkpoint Study in Humans and Dogs
Creators
Description
This archive contains input data and processed objects associated with the RNA-seq analysis described in:
Barking Up the Right Tree: Immune Checkpoint Signatures of Human and Dog Cancers
Preprint: https://doi.org/10.1101/2024.06.26.600825 (currently in review at PLOS Computational Biology)
Structure:
- INPUT/: All raw and filtered input files used in the R analysis (.tsv from Kallisto, .gtf annotation, filtered data and metadata tables)
- OUTPUT/: DESeq2-processed object (`BarkingUpTree_DDS_processed.RData`) used to generate figures and tables
For corresponding code and instructions, see the GitHub repository:
https://github.com/MikolajKocikowski/BarkingUpTree-ploscb
The original raw datasets analyzed in this project are described and cited in the associated manuscript.
Files
BarkingUpTree_Zenodo.zip
Files
(762.8 MB)
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Additional details
Additional titles
- Alternative title (English)
- Barking Up the Right Tree: Immune Checkpoint Signatures of Human and Dog Cancers
Related works
- Is supplement to
- Publication: 10.1101/2024.06.26.600825 (DOI)
Software
- Repository URL
- https://github.com/MikolajKocikowski/BarkingUpTree-ploscb
- Programming language
- R