Published May 16, 2025 | Version v1

ProteoMeter: A Comprehensive Python Library for Proteomic Data Analysis

Contributors

  • 1. ROR icon Pacific Northwest National Laboratory

Description

ProteoMeter is an innovative Python library designed to revolutionize the way researchers approach proteomic data. This resource provides a robust and user-friendly toolkit for processing, integrating, and analyzing proteomic data, leveraging unified structural coordinates and standardized methods. 

Key Features

  • Processing - Offers advanced functionalities for data pre-processing and cleaning of proteomic datasets for ensuring data quality and consistency.
  • Integration - Ability to seamlessly integrate diverse proteomic data sources, enabling researchers to combine datasets from different experiments or platforms for enhancing the in-depth analyses.
  • Standardization - Facilitates accurate comparison and overlay of protein structures, utilizing a unified coordinate system, for improving user identification of structural similarities and differences.

 

Funding Acknowledgments

The software described here was funded by the Predictive Phenomics Science & Technology Initiative, conducted under the Laboratory Directed Research and Development Program, at Pacific Northwest National Laboratory (PNNL). PNNL is a multiprogram national laboratory operated by Battelle for the U.S. Department of Energy Office of Science under Contract No. DE-AC05-76RL01830.

Files

ProteoMeter_2025-06-06.zip

Files (56.5 MB)

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Additional details

Related works

Is documented by
Software documentation: https://phenometers.github.io/proteometer (URL)

Funding

Pacific Northwest National Laboratory
Predictive Phenomics Initiative (PPI) An Integrative Workflow For Processing, Visualization, And Analysis Of Multifaceted Proteome Towards Predictive Phenomics

Software

Repository URL
https://github.com/PNNL-Predictive-Phenomics/ProteoMeter
Programming language
Python
Development Status
Active