Files and splits for pre-training OneProt

The .csv and .txt files correspond to the respective train, validation and test splits for different modalities used to pre-train OneProt. 

*seqstruc.csv structure graph modality

*saprot.txt structure token modality

*text.csv text modality

*pocket.csv pocket modality

test_all.csv a combined dataset used for the final alignment evaluation

pocket_100_residues.h5 correspond to actual data for pocket modality used for pre-training OneProt

Source code  https://github.com/klemens-floege/oneprot/tree/main

Huggingface https://huggingface.co/HelmholtzAI-FZJ/oneprot

ArXiv https://arxiv.org/abs/2411.04863