Published May 16, 2025
| Version v2.4.1.1
Software
Open
github.com/broadinstitute/viral-pipelines/augur_from_mltree
Authors/Creators
Description
Take a premade maximum likelihood tree (Newick format) and run the remainder of the augur pipeline (timetree modificaitons, ancestral inference, etc) and convert to json representation suitable for Nextstrain visualization. See https://nextstrain.org/docs/getting-started/ and https://nextstrain-augur.readthedocs.io/en/stable/
Files
github.com-broadinstitute-viral-pipelines-augur_from_mltree_v2.4.1.1.zip
Files
(17.9 kB)
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md5:4468a70141f62bd0fffbb4f4f0001931
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Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.15428517 (URL)
- https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/augur_from_mltree:v2.4.1.1 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fviral-pipelines%2Faugur_from_mltree/versions/v2.4.1.1/PLAIN-WDL/descriptor/augur_from_mltree.wdl (URL)