dockstore/dockstore: 1.17.0

What's Changed

• DOCK-2589: Only add utf-8 charset to text and json mime types by @svonworl in https://github.com/dockstore/dockstore/pull/6014
• Feature/cwlavro update by @denis-yuen in https://github.com/dockstore/dockstore/pull/6030
• trs extensions to facilitate toil development by @denis-yuen in https://github.com/dockstore/dockstore/pull/6005
• SEAB-5762: Implement pagination to getWorkflowVersions endpoint by @hyunnaye in https://github.com/dockstore/dockstore/pull/6001
• Harvest GitHub-Zenodo DOIs based on latestReleaseDate by @coverbeck in https://github.com/dockstore/dockstore/pull/6035
• DOCK-2582: Better exception messages by @svonworl in https://github.com/dockstore/dockstore/pull/6037
• DOCK-2571: Improve relative readMePath error message by @svonworl in https://github.com/dockstore/dockstore/pull/6040
• Use reusable deploy artifacts workflow by @kathy-t in https://github.com/dockstore/dockstore/pull/6043
• Add id-token write permisson for deploying db docs by @kathy-t in https://github.com/dockstore/dockstore/pull/6047
• update dropwizard to 4.0.11 by @denis-yuen in https://github.com/dockstore/dockstore/pull/5804
• DOCK-2591: Sort "representative" version first by default by @svonworl in https://github.com/dockstore/dockstore/pull/6042
• Adjust quay image sha by @svonworl in https://github.com/dockstore/dockstore/pull/6052
• SEAB-6464: Infer .dockstore.yml by @svonworl in https://github.com/dockstore/dockstore/pull/5939
• Revert reusable workflow revert by @kathy-t in https://github.com/dockstore/dockstore/pull/6054
• DOCK-2600: Fix backlinks from Zenodo DOI records by @svonworl in https://github.com/dockstore/dockstore/pull/6053
• SEAB-6341: add include query param to version endpoints by @hyunnaye in https://github.com/dockstore/dockstore/pull/6055
• fix runner dependencies metadata resource call and add test by @denis-yuen in https://github.com/dockstore/dockstore/pull/6062
• test with postgres 16.4 by @denis-yuen in https://github.com/dockstore/dockstore/pull/6063
• Update Surefire to non-milestone version by @coverbeck in https://github.com/dockstore/dockstore/pull/5981
• put image digest in both places for dockstore-deploy builds by @denis-yuen in https://github.com/dockstore/dockstore/pull/6068
• Feature/fix swagger validation by @denis-yuen in https://github.com/dockstore/dockstore/pull/6069
• update to newer dropwizard and logback by @denis-yuen in https://github.com/dockstore/dockstore/pull/6070
• Add lastModified and selected_concept_doi to elastic search object for search cards by @kathy-t in https://github.com/dockstore/dockstore/pull/6071
• fix regression integration tests by @denis-yuen in https://github.com/dockstore/dockstore/pull/6072
• SEAB-6917: add Toil to Partner enum by @hyunnaye in https://github.com/dockstore/dockstore/pull/6073
• Fix bad openapi.yaml merge by @kathy-t in https://github.com/dockstore/dockstore/pull/6079
• Put back reusable deploy workflow by @kathy-t in https://github.com/dockstore/dockstore/pull/6080
• test action ubuntu version by @denis-yuen in https://github.com/dockstore/dockstore/pull/6082
• DOCK-2608: Incorporate other signals into version sorting by @svonworl in https://github.com/dockstore/dockstore/pull/6081
• DOCK-2591: Change default version sort order to descending by @svonworl in https://github.com/dockstore/dockstore/pull/6083
• SEAB-6995: Reenable "authorless" DOIs by @svonworl in https://github.com/dockstore/dockstore/pull/6084
• SEAB-6803: Implement "versions needing a retroactive DOI" endpoint by @svonworl in https://github.com/dockstore/dockstore/pull/6086
• SEAB-6803: Create retroactive automatic DOI endpoint by @svonworl in https://github.com/dockstore/dockstore/pull/6087
• Bump org.apache.commons:commons-vfs2 from 2.9.0 to 2.10.0 in /bom-internal by @dependabot in https://github.com/dockstore/dockstore/pull/6091
• Snakemake tests and some clean-up by @denis-yuen in https://github.com/dockstore/dockstore/pull/6085
• add markdown conversion to html and run current tests by @denis-yuen in https://github.com/dockstore/dockstore/pull/6093
• SEAB-6978: Lock down "platform partner" users by @svonworl in https://github.com/dockstore/dockstore/pull/6089
• SEAB-7080: Use tag creation date as DOI publication date by @svonworl in https://github.com/dockstore/dockstore/pull/6096
• Add snakemake plugin to webservice image by @denis-yuen in https://github.com/dockstore/dockstore/pull/6097
• SEAB-7089: Fix slow-loading user profile "Activity" section by @svonworl in https://github.com/dockstore/dockstore/pull/6098
• DOCK-2585: remove restub functionality by @hyunnaye in https://github.com/dockstore/dockstore/pull/6094
• SMK app log tweak based on qa testing by @denis-yuen in https://github.com/dockstore/dockstore/pull/6099
• Cherry-pick notebook commit to release by @svonworl in https://github.com/dockstore/dockstore/pull/6105
• SEAB-6978: Correct "metrics robot" design by @svonworl in https://github.com/dockstore/dockstore/pull/6104
• SEAB-7134: Fix auth-related 500 by @svonworl in https://github.com/dockstore/dockstore/pull/6106
• further sanitize sourcefiles, strict by @denis-yuen in https://github.com/dockstore/dockstore/pull/6103
• update snakemake plugin by @denis-yuen in https://github.com/dockstore/dockstore/pull/6107
• Bump snakemake plugin version by @kathy-t in https://github.com/dockstore/dockstore/pull/6109

Full Changelog: https://github.com/dockstore/dockstore/compare/1.16.6...1.17.0