Published May 10, 2025 | Version v2

DEMO_MRS4Brain_toolbox

  • 1. École Polytechnique Fédérale de Lausanne
  • 2. CIBM MRI EPFL AIT

Description

Live demos of MRS4Brain toolbox used for 1H-FID- MRSI data processing. 

The MRS4Brain Toolbox is developed by MRS4Brain research group @ CIBM MRI EPFL AIT and was designed to offer advanced functionalities for Bruker preclinical MRSI data, encompassing preprocessing, fitting, quantification, semi-automatic quality control, co-registration and segmentation of metabolic maps using anatomical images, all conveniently integrated within a single open-source graphical user interface (GUI). The development of this user-friendly toolbox aims to streamline the processing workflow and enhance the accessibility of MRSI for researchers in the preclinical field. 

MRS4Brain toolbox is available for download here: MRS4Brain/MRS4Brain-toolbox (github.com) and https://github.com/AlvBrayan/MRS4Brain-toolbox/

Please cite the following article if you are using MRS4Brain toolbox to process your data

“Fast high-resolution metabolite mapping in the rat brain using 1 H-FID-MRSI at 14.1T”

Dunja Simicic, Brayan Alves, Jessie Mosso, Guillaume Briand, Thanh Phong Lê, Ruud B. van Heeswijk, Jana Starčuková, Bernard Lanz, Antoine Klauser, Bernhard Strasser, Wolfgang Bogner, Cristina Cudalbu

under review in NMR in Biomed

Files

MRS4Brain_toolboxDEMO_SVSanalysis.mp4

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Additional details

Related works

Is described by
Publication: 10.1002/nbm.5304 (DOI)

Funding

Swiss National Science Foundation
Enhanced MR Spectroscopic mapping of brain regional changes in type C hepatic encephalopathy of juvenile rats to develop novel combinatorial treatments 310030_201218