Two new species of Penicillium and a new genus in Xylariomycetidae from the forest dump-sites in Chiang Mai, Thailand
Authors/Creators
- 1. Shenzhen University, Shenzhen, China
- 2. Chiang Mai University, Chiang Mai, Thailand
- 3. Chiang Mai University, Chiang Mai, Thailand|Shenzhen University, Shenzhen, China
- 4. Chiang Mai University, Chiang Mai, Thailand|Academy of Science, The Royal Society of Thailand, Bangkok, Thailand
Description
Waste accumulation in forest regions can have a severe impact on the soil mycobiome. However, research on soil fungi inhabiting forest disposal sites remains limited. Therefore, this study focused on the taxonomy and phylogeny of ascomycetes isolated from soil in forest dump-sites in Chiang Mai, Thailand. The fungal strains were identified using morphological characterisations and multigene phylogenetic reconstruction. A new genus, Pseudoleptodontidium, typified by Ps. chiangmaiense sp. nov. (Amphisphaeriales genera incertae sedis, Xylariomycetidae), along with two new species, Penicillium chiangmaiense (series Janthinella, section Lanata-Divaricata) and P. terrae (series Erubescentia, section Exilicaulis) (Aspergillaceae, Eurotiales), are described in detail and compared with closely-related species. Our discovery offers valuable insights into the soil ascomycetes associated with forest disturbances.
Files
MC_article_150635.pdf
Files
(9.5 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:a9f8c465fc7d9ae57890ead3acf69636
|
9.5 MB | Preview Download |
System files
(276.6 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:ee274b49a920ef96923b2df106823fb0
|
276.6 kB | Download |
Linked records
Additional details
References
- Afshari N, Karimi O, De Farias ARG, Suwannarach N, Bhunjun CS, Zeng X-Y, Lumyong S (2023) Additions to Diatrypaceae (Xylariales): Novel taxa and new host associations. Journal of Fungi (Basel, Switzerland) 9: 1151. https://doi.org/10.3390/jof9121151
- Ando K, Nawawi A, Manoch L, Pitt JI (1998) Three new species and a new combination in the genus Torulomyces from soil. Mycoscience 39(3): 313–318. https://doi.org/10.1007/BF02464014
- Ansari L, Asgari B, Zare R, Zamanizadeh HR (2023) Penicillium rhizophilum, a novel species in the section Exilicaulis isolated from the rhizosphere of sugarcane in Southwest Iran. International Journal of Systematic and Evolutionary Microbiology 73(9). https://doi.org/10.1099/ijsem.0.006028
- Araújo KS, Alves JL, Pereira OL, de Queiroz MV (2024) Five new species of endophytic Penicillium from rubber trees in the Brazilian Amazon. Brazilian Journal of Microbiology 55: 3051–3074. https://doi.org/10.1007/s42770-024-01478-9
- Becker K, Stadler M (2021) Recent progress in biodiversity research on the Xylariales and their secondary metabolism. The Journal of Antibiotics 74: 1–23. https://doi.org/10.1038/s41429-020-00376-0
- Coleine C, Stajich JE, Selbmann L (2022) Fungi are key players in extreme ecosystems. Trends in Ecology & Evolution 37: 517–528. https://doi.org/10.1016/j.tree.2022.02.002
- Costa JH, Bazioli JM, De Moraes Pontes JG, Fill TP (2019) Penicillium digitatum infection mechanisms in citrus: What do we know so far? Fungal Biology 123: 584–593. https://doi.org/10.1016/j.funbio.2019.05.004
- Crous PW, Akulov A, Balashov S, Boers J, Braun U, Castillo J, Delgado MA, Denman S, Erhard A, Gusella G, Jurjević Ž, Kruse J, Malloch DW, Osieck ER, Polizzi G, Schumacher RK, Slootweg E, Starink-Willemse M, Van Iperen AL, Verkley GJM, Groenewald JZ (2023) New and Interesting Fungi. 6. Fungal Systematics and Evolution 11: 109–156. https://doi.org/10.3114/fuse.2023.11.09
- da Silva IJS, Sousa TF, de Queiroz CA, Castro GDS, Caniato FF, de Medeiros LS, Angolini CFF, Hanada RE, Koolen HHF, da Silva GF (2023) Penicillium amapaense sp. nov., section Exilicaulis, and new records of Penicillium labradorum in Brazil isolated from Amazon River sediments with potential applications in agriculture and biotechnology. Mycological Progress 22(4): 23. https://doi.org/10.1007/s11557-023-01868-7
- Daranagama DA, Hyde KD, Sir EB, Thambugala KM, Tian Q, Samarakoon MC, McKenzie EHC, Jayasiri SC, Tibpromma S, Bhat JD, Liu X, Stadler M (2018) Towards a natural classification and backbone tree for Graphostromataceae, Hypoxylaceae, Lopadostomataceae and Xylariaceae. Fungal Diversity 88: 1–165. https://doi.org/10.1007/s13225-017-0388-y
- Dodge BO (1933) The perithecium and ascus of Penicillium. Mycologia 25: 90–104. https://doi.org/10.1080/00275514.1933.12020653
- Edgar RC (2004) MUSCLE: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: e113. https://doi.org/10.1186/1471-2105-5-113
- Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution; International Journal of Organic Evolution 39: 783–791. https://doi.org/10.2307/2408678
- Frąc M, Hannula SE, Bełka M, Jędryczka M (2018) Fungal biodiversity and their role in soil health. Frontiers in Microbiology 9: 707. https://doi.org/10.3389/fmicb.2018.00707
- Glass NL, Donaldson GC (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61: 1323–1330. https://doi.org/10.1128/aem.61.4.1323-1330.1995
- Gomes de Farias AR, Yasanthika WAE, Monkai J (2023) Insights into the profile of soil fungal diversity in Thailand. Asian Journal of Mycology, 305–317. https://doi.org/10.5943/ajom/6/2/11
- Gong Z, Jin L, Yu X, Wang B, Hu S, Ruan H, Sung Y-J, Lee H-G, Jin F (2023) Biodegradation of low density polyethylene by the fungus Cladosporium sp. recovered from a landfill Site. Journal of Fungi (Basel, Switzerland) 9: 605. https://doi.org/10.3390/jof9060605
- Hall T (2004) Bioedit Version 6.0.7. http://www.mbio.ncsu.edu/bioedit/bioedit [Accessed November 2024]
- Hernández-Restrepo M, Gené J, Castañeda-Ruiz RF, Mena-Portales J, Crous PW, Guarro J (2017) Phylogeny of saprobic microfungi from Southern Europe. Studies in Mycology 86: 53–97. https://doi.org/10.1016/j.simyco.2017.05.002
- Hong SB, Cho HS, Shin HD, Frisvad JC, Samson RA (2006) Novel Neosartorya species isolated from soil in Korea. International Journal of Systematic and Evolutionary Microbiology 56: 477–486. https://doi.org/10.1099/ijs.0.63980-0
- Houbraken J, Samson RA (2011) Phylogeny of Penicillium and the segregation of Trichocomaceae into three families. Studies in Mycology 70(1): 1–51. https://doi.org/10.3114/sim.2011.70.01
- Houbraken J, Kocsubé S, Visagie CM, Yilmaz N, Wang XC, Meijer M, Kraak B, Hubka V, Bensch K, Samson RA, Frisvad JC (2020) Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and species. Studies in Mycology 95: 5–169. https://doi.org/10.1016/j.simyco.2020.05.002
- Karimi O, Chethana KWT, Farias ARG, Li Q (2023) Two new records of Xylariales species from Northern Thailand. Phytotaxa 598: 187–205. https://doi.org/10.11646/phytotaxa.598.3.1
- Karimi O, Afshari N, Asghari R, Li Q, Chethana KWT, Hyde KD, Alotibi FO (2024) Novel discoveries of Xylariomycetidae (Ascomycota) taxa from peat swamp forests and other terrestrial habitats in Thailand. MycoKeys 107: 219–247. https://doi.org/10.3897/mycokeys.107.127749
- Khan S, Ali SA, Ali AS (2022) Biodegradation of low density polyethylene (LDPE) by mesophilic fungus 'Penicillium citrinum' isolated from soils of plastic waste dump yard, Bhopal, India. Environmental Technology 44: 2300–2314. https://doi.org/10.1080/09593330.2022.2027025
- Khuna S, Kumla J, Thitla T, Hongsanan S, Lumyong S, Suwannarach N (2023) Penicillium thailandense (Aspergillaceae, Eurotiales), a new species isolated from soil in northern Thailand. Phytotaxa 612(1): 033–045. https://doi.org/10.11646/phytotaxa.612.1.2
- Konta S, Hyde KD, Phookamsak R, Xu JC, Maharachchikumbura SSN, Daranagama DA, McKenzie EH, Boonmee S, Tibpromma S, Eungwanichayapant PD, Samarakoon MC (2020) Polyphyletic genera in Xylariaceae (Xylariales): Neoxylaria gen. nov. and Stilbohypoxylon. Mycosphere 11: 2629–2651. https://doi.org/10.5943/mycosphere/11/1/17
- Kooch Y, Nouraei A, Haghverdi K, Kolb S, Francaviglia R (2023) Landfill leachate has multiple negative impacts on soil health indicators in Hyrcanian forest, northern Iran. The Science of the Total Environment 896: 166341. https://doi.org/10.1016/j.scitotenv.2023.166341
- Korhonen K, Hintikka V (1980) Simple isolation and inoculation methods for fungal cultures. Karstenia 20: 19–22. https://doi.org/10.29203/ka.1980.192
- Labuda R, Bacher M, Rosenau T, Gasparotto E, Gratzl H, Doppler M, Sulyok M, Kubátová A, Berger H, Cank K, Raja HA, Oberlies NH, Schüller C, Strauss J (2021) Polyphasic approach utilized for the identification of two new toxigenic members of Penicillium section Exilicaulis, P. krskae and P. silybi spp. nov. Journal of Fungi (Basel, Switzerland) 7(7): 557. https://doi.org/10.3390/jof7070557
- Lenz AR, Balbinot E, de Abreu FP, de Oliveira NS, Fontana RC, de Avila E, Silva S, Park MS, Lim YW, Houbraken J, Camassola M, Dillon AJP (2022) Taxonomy, comparative genomics and evolutionary insights of Penicillium ucsense: A novel species in series Oxalica. Antonie van Leeuwenhoek 115: 1009–1029. https://doi.org/10.1007/s10482-022-01746-4
- Li WL, Liang RR, Yang J, Liu JK (2024) Morpho-molecular characterization reveals a new genus, three novel species and two new host records in Xylariomycetidae. Journal of Fungi (Basel, Switzerland) 10: 189. https://doi.org/10.3390/jof10030189
- Lin D, Yang G, Dou P, Qian S, Zhao L, Yang Y, Fanin N (2020) Microplastics negatively affect soil fauna but stimulate microbial activity: Insights from a field-based microplastic addition experiment. Proceedings. Biological Sciences 287: 20201268. https://doi.org/10.1098/rspb.2020.1268
- Link JHF (1809) Observationes in ordines plantarum naturales. Dissertatio I. Magazin Der Gesellschaft Naturforschenden Freunde Berlin 3: 3–42. [in Latin]
- Liu YJ, Whelen S, Hall BD (1999) Phylogenetic relationships among ascomycetes: Evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16: 1799–1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
- Liu C, Wang XC, Yu ZH, Zhuang WY, Zeng ZQ (2023) Seven new species of Eurotiales (Ascomycota) isolated from tidal flat sediments in China. Journal of Fungi (Basel, Switzerland) 9: 960. https://doi.org/10.3390/jof9100960
- Maharachchikumbura SSN, Hyde KD, Jones EBG, McKenzie EHC, Bhat JD, Dayarathne MC, Huang S-K, Norphanphoun C, Senanayake IC, Perera RH, Shang Q-J, Xiao Y, D'souza MJ, Hongsanan S, Jayawardena RS, Daranagama DA, Konta S, Goonasekara ID, Zhuang W-Y, Jeewon R, Phillips AJL, Abdel-Wahab MA, Al-Sadi AM, Bahkali AH, Boonmee S, Boonyuen N, Cheewangkoon R, Dissanayake AJ, Kang J, Li Q-R, Liu JK, Liu XZ, Liu Z-Y, Luangsa-Ard JJ, Pang K-L, Phookamsak R, Promputtha I, Suetrong S, Stadler M, Wen T, Wijayawardene NN (2016) Families of Sordariomycetes. Fungal Diversity 79: 1–317. https://doi.org/10.1007/s13225-016-0369-6
- Miller MA, Holder MT, Vos R, Midford PE, Liebowitz T, Chan L, Hoover P, Warnow T (2009) The CIPRES Portals. CIPRES. http://www.phylo.org/sub_sections/portal [Accessed November 2024]
- Monkai J, Phookamsak R, Tennakoon DS, Bhat DJ, Xu S, Li Q, Xu J, Mortimer PE, Kumla J, Lumyong S (2022) Insight into the taxonomic resolution of Apiospora: Introducing novel species and records from bamboo in China and Thailand. Diversity 14: 918. https://doi.org/10.3390/d14110918
- Nguyen VD, Pham TT (2022) Penicillium vietnamense sp. nov., the first novel marine fungi species described from vietnam with a unique conidiophore structure and molecular phylogeny of Penicillium section Charlesia. Mycobiology 50(3): 155–165. https://doi.org/10.1080/12298093.2022.2068750
- Nishimura D (2000) Sequencher 3.1.1. Biotech Software & Internet Report 1: 24–30. https://doi.org/10.1089/152791600319231
- Nóbrega JP, do Nascimento Barbosa R, Lima JMdS, Bento DdM, de Souza-Motta CM, Melo RFR (2024) Six new Penicillium species in the section Lanata-Divaricata from a cave in Amazon rainforest, Brazil. Mycological Progress 23: 71. https://doi.org/10.1007/s11557-024-02007-6
- Nylander JAA (2004) MrModeltest 2.0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala.
- O'Donnell K, Cigelnik E (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution 7: 103–116. https://doi.org/10.1006/mpev.1996.0376
- Oshikata C, Tsurikisawa N, Saito A, Watanabe M, Kamata Y, Tanaka M, Tsuburai T, Mitomi H, Takatori K, Yasueda H, Akiyama K (2013) Fatal pneumonia caused by Penicillium digitatum: A case report. BMC Pulmonary Medicine 13: 16. https://doi.org/10.1186/1471-2466-13-16
- Pangging M, Nguyen TTT, Lee HB (2021) Seven new records of Penicillium species belonging to section Lanata-Divaricata in Korea. Mycobiology 49: 363–375. https://doi.org/10.1080/12298093.2021.1952814
- Perrone G, Susca A (2017) Penicillium species and their associated mycotoxins. Methods in Molecular Biology (Clifton, N.J.): 107–119. https://doi.org/10.1007/978-1-4939-6707-0_5
- Peterson SW, Vega FE, Posada F, Nagai C (2005) Penicillium coffeae, a new endophytic species isolated from a coffee plant and its phylogenetic relationship to P. fellutanum, P. thiersii and P. brocae based on parsimony analysis of multilocus DNA sequences. Mycologia 97(3): 659–666. https://doi.org/10.1080/15572536.2006.11832796
- Pitt JI (1980) [1979] The Genus Penicillium and its Teleomorphic States Eupenicillium and Talaromyces. Acdemic Press, London.
- Rambaut A (2019) FigTree tree figure drawing tool version 131; Institute of Evolutionary 623 Biology (Edinburgh, Scotland: University of Edinburgh). http://treebioedacuk/software/figtree/ [Accessed November 2024]
- Rao V, De Hoog GS (1986) New of critical hyphomycetes from India. Studies in Mycology 28: 1–84.
- Rathnayaka AR, Tennakoon DS, Jones GE, Wanasinghe DN, Bhat DJ, Priyashantha AH, Stephenson SL, Tibpromma S, Karunarathna SC (2024) Significance of precise documentation of hosts and geospatial data of fungal collections, with an emphasis on plant-associated fungi. New Zealand Journal of Botany 63: 462–489. https://doi.org/10.1080/0028825X.2024.2381734
- Rehner SA, Samuels GJ (1994) Taxonomy and phylogeny of gliocladium analyzed from nuclear large subunit ribosomal DNA sequences. Mycological Research 98: 625–634. https://doi.org/10.1016/S0953-7562(09)80409-7
- Ren GC, Pang AM, Gao Y, Wu SX, Ge ZQ, Zhang TF, Wanasinghe DN, Khan S, Mortimer PE, Xu JC, Gui H (2021) Polyurethane-degrading fungi from soils contaminated with rocket propellant and their ability to decompose alkyne terminated polybutadiene with urethane. Studies in Fungi 6: 224–239. https://doi.org/10.5943/sif/6/1/15
- Rodríguez-Andrade E, Stchigel AM, Cano-Lira JF (2021) New xerophilic species of Penicillium from soil. Journal of Fungi (Basel, Switzerland) 7: 126. https://doi.org/10.3390/jof7020126
- Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England) 19: 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
- Samarakoon MC (2024) Additions to the Xylariomycetidae (Sordariomycetes) Fungal Flora from Northern Thailand: Amphisphaeria chiangmaiensis sp. nov. and A. hydei sp. nov. New Zealand Journal of Botany 62: 253–269. https://doi.org/10.1080/0028825X.2023.2284420
- Samarakoon MC, Hyde KD, Promputtha I, Hongsanan S, Ariyawansa HA, Maharachchikumbura SSN, Daranagama DA, Stadler M, Mapook A (2016) Evolution of Xylariomycetidae (Ascomycota: Sordariomycetes). Mycosphere 7: 1746–1761. https://doi.org/10.5943/mycosphere/7/11/9
- Samarakoon MC, Hyde KD, Maharachchikumbura SSN, Stadler M, Jones EBG, Promputtha I, Suwannarach N, Camporesi E, Bulgakov TS, Liu J-K (2022) Taxonomy, phylogeny, molecular dating and ancestral state reconstruction of Xylariomycetidae (Sordariomycetes). Fungal Diversity 112: 1–88. https://doi.org/10.1007/s13225-021-00495-5
- Samarakoon MC, Lumyong S, Manawasinghe IS, Suwannarach N, Cheewangkoon R (2023) Addition of five novel fungal flora to the Xylariomycetidae (Sordariomycetes, Ascomycota) in northern Thailand. Journal of Fungi (Basel, Switzerland) 9: 1065. https://doi.org/10.3390/jof9111065
- Sangale MK, Shahnawaz M, Ade AB (2019) Potential of fungi isolated from the dumping sites mangrove rhizosphere soil to degrade polythene. Scientific Reports 9: 5390. https://doi.org/10.1038/s41598-019-41448-y
- Sathiyabama M, Boomija RV, Sathiyamoorthy T, Mathivanan N, Balaji R (2024) Mycodegradation of low-density polyethylene by Cladosporium sphaerospermum, isolated from platisphere. Scientific Reports 14: 8351. https://doi.org/10.1038/s41598-024-59032-4
- Schloter M, Nannipieri P, Sørensen SJ, Van Elsas JD (2018) Microbial indicators for soil quality. Biology and Fertility of Soils 54: 1–10. https://doi.org/10.1007/s00374-017-1248-3
- Singh M, Singh D, Rai PK, Suyal DC, Saurabh S, Soni R, Giri K, Yadav AN (2021) Fungi in remediation of hazardous wastes: current status and future outlook. Fungal Biology, 195–224. https://doi.org/10.1007/978-3-030-68260-6_8
- Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics (Oxford, England) 22: 2688–2690. https://doi.org/10.1093/bioinformatics/btl446
- Sugita R, Hirayama K, Shirouzu T, Tanaka K (2022) Spirodecosporaceae fam. nov. (Xylariales, Sordariomycetes) and two new species of Spirodecospora. Fungal Systematics and Evolution 10: 217–229. https://doi.org/10.3114/fuse.2022.10.09
- Sun Y, Xie S, Zang J, Wu M, Tao J, Li S, Du X, Wang J (2024) Terrestrial plastisphere as unique niches for fungal communities. Communications Earth & Environment 5: 483. https://doi.org/10.1038/s43247-024-01645-8
- Suwannarach N, Khuna S, Chaiwong K, Senwanna C, Nuangmek W, Kumla J (2024) Identification and fungicide sensitivity of the blue mold pathogen in postharvest-stored elephant garlic Bulbs in Thailand. Studies in Fungi 0: 1–9. https://doi.org/10.48130/sif-0024-0015
- Tedersoo L, Mikryukov V, Anslan S, Bahram M, Khalid AN, Corrales A, Agan A, Vasco-Palacios A-M, Saitta A, Antonelli A, Rinaldi AC, Verbeken A, Sulistyo BP, Tamgnoue B, Furneaux B, Ritter CD, Nyamukondiwa C, Sharp C, Marín C, Dai DQ, Gohar D, Sharmah D, Biersma EM, Cameron EK, De Crop E, Otsing E, Davydov EA, Albornoz FE, Brearley FQ, Buegger F, Gates G, Zahn G, Bonito G, Hiiesalu I, Hiiesalu I, Zettur I, Barrio IC, Pärn J, Heilmann-Clausen J, Ankuda J, Kupagme JY, Sarapuu J, Maciá-Vicente JG, Fovo JD, Geml J, Alatalo JM, Alvarez-Manjarrez J, Monkai J, Põldmaa K, Runnel K, Adamson K, Bråthen KA, Pritsch K, Tchan KI, Armolaitis K, Hyde KD, Newsham KK, Panksep K, Adebola LA, Lamit LJ, Saba M, Da Silva Cáceres ME, Tuomi M, Gryzenhout M, Bauters M, Bálint M, Wijayawardene N, Hagh-Doust N, Yorou NS, Kurina O, Mortimer PE, Meidl P, Nilsson RH, Puusepp R, Casique-Valdés R, Drenkhan R, Garibay-Orijel R, Godoy R, Alfarraj S, Rahimlou S, Põlme S, Dudov SV, Mundra S, Ahmed T, Netherway T, Henkel TW, Roslin T, Fedosov VE, Onipchenko VG, Yasanthika W, Lim YW, Piepenbring M, Klavina D, Kõljalg U, Abarenkov K (2021) The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. Fungal Diversity 111: 573–588. https://doi.org/10.1007/s13225-021-00493-7
- Thakshila SAD, Bhunjun CS, Samarakoon MC, Rathnayaka AR, Gajanayake AJ (2024) Morpho-molecular analyses reveal a novel species, Xenoanthostomella thailandica (Gyrothricaceae, Xylariales), from northern Thailand. New Zealand Journal of Botany 62: 336–366. https://doi.org/10.1080/0028825X.2024.2304776
- Thom C (1930) The Penicillia. The Williams & Wilkins Company, Baltimore.
- Toghueo RMK, Boyom FF (2020) Endophytic Penicillium species and their agricultural, biotechnological, and pharmaceutical applications. 3 Biotech 10. https://doi.org/10.1007/s13205-020-2081-1
- U'Ren JM, Miadlikowska J, Zimmerman NB, Lutzoni F, Stajich JE, Arnold AE (2016) Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota). Molecular Phylogenetics and Evolution 98: 210–232. https://doi.org/10.1016/j.ympev.2016.02.010
- Ueda SA (1995) New species of Eupenicillium from marine sediment. Mycoscience 36: 451–454. https://doi.org/10.1007/BF02268631
- Verma N, Gupta S (2019) Assessment of LDPE degrading potential Aspergillus species isolated from municipal landfill sites of Agra. SN Applied Sciences 1: 701. https://doi.org/10.1007/s42452-019-0746-3
- Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
- Visagie CM, Houbraken J, Frisvad JC, Hong SB, Klaassen CHW, Perrone G, Seifert KA, Varga J, Yaguchi T, Samson RA (2014) Identification and nomenclature of the genus Penicillium. Studies in Mycology 78: 343–371. https://doi.org/10.1016/j.simyco.2014.09.001
- Visagie CM, Hirooka Y, Tanney JB, Whitfield E, Mwange K, Meijer M, Amend AS, Seifert KA, Samson RA (2014b) Aspergillus, Penicillium and Talaromyces isolated from house dust samples collected around the world. Studies in Mycology 78: 63–139. https://doi.org/10.1016/j.simyco.2014.07.002
- Visagie CM, Houbraken J, Dijksterhuis J, Seifert KA, Jacobs K, Samson RA (2016a) A taxonomic review of Penicillium species producing conidiophores with solitary phialides, classified in section Torulomyces. Persoonia 36: 134–155. https://doi.org/10.3767/003158516X690952
- Visagie CM, Renaud JB, Burgess KM, Malloch DW, Clark D, Ketch L, Urb M, Louis-Seize G, Assabgui R, Sumarah MW, Seifert KA (2016b) Fifteen new species of Penicillium. Persoonia 36: 247–280. https://doi.org/10.3767/003158516X691627
- Visagie CM, Seifert KA, Houbraken J, Samson RA, Jacobs K (2016c) A phylogenetic revision of Penicillium sect. Exilicaulis, including nine new species from fynbos in South Africa. IMA Fungus 7: 75–117. https://doi.org/10.5598/imafungus.2016.07.01.06
- Visagie CM, Yilmaz N, Kocsubé S, Frisvad JC, Hubka V, Samson RA, Houbraken J (2024a) A review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales species. Studies in Mycology 107: 1–66. https://doi.org/10.3114/sim.2024.107.01
- Visagie CM, Houbraken J, Yilmaz N (2024b) The re-identification of Penicillium and Talaromyces (Eurotiales) catalogued in South African culture collections. Persoonia 53: 29–61. https://doi.org/10.3767/persoonia.2024.53.02
- Wang X, Wanasinghe DN, Zhang J, Ma J, Zhou P, Zhang L, Lu Y, Zhang Z (2023a) Insights from the endophytic Fungi in Amphisphaeria (Sordariomycetes): A. orixae sp. nov. from Orixa japonica and Its Secondary Metabolites. Microorganisms 11: 1268. https://doi.org/10.3390/microorganisms11051268
- Wang XC, Zhang ZK, Zhuang WY (2023b) Species diversity of Penicillium in Southwest China with discovery of forty-three new species. Journal of Fungi (Basel, Switzerland) 9: 1150. https://doi.org/10.3390/jof9121150
- Wanthongchai K, Tanpipat V, Noochaiya P, Sirimongkonlertkun N, Macatangay R, Thammavongsa L, Oo TN, Bran SH, Solanki R (2021) Integrated highland wildfire, smoke, and haze management in the Upper Indochina region. APN Science Bulletin 11: 133–143. https://doi.org/10.30852/sb.2021.1704
- Wendt L, Sir EB, Kuhnert E, Heitkämper S, Lambert C, Hladki AI, Romero AI, Luangsa-Ard JJ, Srikitikulchai P, Peršoh D, Stadler M (2017) Resurrection and emendation of the Hypoxylaceae, recognised from a multigene phylogeny of the Xylariales. Mycological Progress 17: 115–154. https://doi.org/10.1007/s11557-017-1311-3
- White TJ, Bruns T, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innes MA, Gelfand DH, Sninsky JJ, White TJ (Eds) PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Wolski EA (2023) The versatility of Penicillium species to degrade organic pollutants and its use for wastewater treatment. Studies in Fungi 8: 1–10. https://doi.org/10.48130/SIF-2023-0002
- Yasanthika E, Wanasinghe DN, Ren G-C, Karunarathna SC, Tennakoon DS, Monkai J, Gui H, Mortimer PE, Lumyong S, Hyde KD (2021) Taxonomic and phylogenetic insights into novel Ascomycota from contaminated soils in Yunnan, China. Phytotaxa 513: 203–225. https://doi.org/10.11646/phytotaxa.513.3.2
- Yasanthika W, Wanasinghe D, Mortimer P, Monkai J, Farias A (2022) The importance of culture-based techniques in the genomic era for assessing the taxonomy and diversity of soil fungi. Mycosphere : Journal of Fungal Biology 13: 724–751. https://doi.org/10.5943/mycosphere/13/1/8
- Yasanthika WAE, De Farias ARG, Wanasinghe DN, Chethana KWT, Zare R, Cai L, Maharachchikumbura SSN, Tennakoon DS, Perera RH, Luangharn T, Chomnunti P (2023) a web-based platform for soil-inhabiting Ascomycota species. Studies in Fungi 8: 16. https://doi.org/10.48130/SIF-2023-0016