Published April 29, 2025
| Version HPRC v1.1
Dataset
Open
PangyPlot Input - HPRC v1.1 minigraph-cactus (GRCh38 reference)
Authors/Creators
Description
This dataset contains chromosome-level pangenome graphs from the Human Pangenome Reference Consortium (HPRC) minigraph-cactus outputs (GRCh38 reference). Each chromosome graph was converted to GFA format and processed with odgi layout to generate a 2D layout. Additionally, each graph includes a reference coordinate mapping file that assigns genomic positions to graph nodes. All files are provided per chromosome and packaged in a zipped archives.
Files
chr1.zip
Files
(15.1 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:7d1a1382fa2bd8d0153c6d68ff7136d7
|
1.2 GB | Preview Download |
|
md5:cee66b0da23bf4509edac576e3ce4c4f
|
713.2 MB | Preview Download |
|
md5:72813e8c4bf82d6b78859701ad5948af
|
683.3 MB | Preview Download |
|
md5:50d1895a51ae2c5af248e0ef5fb4cab5
|
662.8 MB | Preview Download |
|
md5:3fabb973eaa790d45dc79f8615cc6cc3
|
503.5 MB | Preview Download |
|
md5:02346928df7f0a282063e43318e1c6c5
|
475.8 MB | Preview Download |
|
md5:a81b34d4a77ad6d8464b66b33559d60c
|
438.8 MB | Preview Download |
|
md5:ba331e4a1d43d84422d2e0dc0e85ab1b
|
537.6 MB | Preview Download |
|
md5:5bd0f82733227b4bd39fac98b773232b
|
434.3 MB | Preview Download |
|
md5:045a3ac02205bc599c78d1ea710856ef
|
401.4 MB | Preview Download |
|
md5:4702e0c3fd88b29e72f2e209bf18000c
|
380.1 MB | Preview Download |
|
md5:67ec15d250ff844e9cbcbb64d7b44da5
|
1.2 GB | Preview Download |
|
md5:fb67c28fb8b603e7d5e77054ff134ccd
|
341.6 MB | Preview Download |
|
md5:60dd7632f6a536277521833a1654315f
|
250.0 MB | Preview Download |
|
md5:c743786bde0cf3f50ee2aa9a2239954a
|
233.4 MB | Preview Download |
|
md5:9b6c3cd9d0a33fffac3bfa718bb048fb
|
959.4 MB | Preview Download |
|
md5:517af5af7f09b7edde2515215880c558
|
1.0 GB | Preview Download |
|
md5:7bd5c7c0ab7cc68e2efee391de8c8755
|
915.1 MB | Preview Download |
|
md5:6f2edac69bc95b1145ab83dc64e2c9fd
|
883.8 MB | Preview Download |
|
md5:ae6d34f2d935230cf2df3d8982adf516
|
872.7 MB | Preview Download |
|
md5:49200bc108f3dee1a6f82972de1d138f
|
807.0 MB | Preview Download |
|
md5:777c973e754c1e9c68413faaa659f2e9
|
693.2 MB | Preview Download |
|
md5:cd2493e59eff5a5de6322cd0e4d94807
|
755.1 kB | Preview Download |
|
md5:89f34d5696ce23f877bd4b1d1827deeb
|
82.7 kB | Preview Download |
|
md5:7cd38ff894f3188d83eac15c9cb5edc3
|
7.6 MB | Preview Download |
|
md5:70f41787c5ee810083bad72c858df3ed
|
520.8 MB | Preview Download |
|
md5:dc39911e4efe9842cfee74b231383f66
|
19.0 MB | Preview Download |
Additional details
Related works
- Is derived from
- Dataset: https://github.com/human-pangenomics/hpp_pangenome_resources (URL)
Software
- Repository URL
- https://github.com/ScottMastro/pangyplot