There is a newer version of the record available.

Published April 21, 2025 | Version v0.4.0
Software Open

scverse/spatialdata: v0.4.0

Authors/Creators

  • 1. @theislab
  • 2. European Molecular Biology Laboratory
  • 3. Iber Lab - ETH Zürich
  • 4. CZI
  • 5. Cure51 and Gustave Roussy Institute
  • 6. Universiteit Gent
  • 7. @scverse @laminlabs @theislab
  • 8. Wellcome Sanger Institute
  • 9. Genentech
  • 10. Helmholtz Zentrum
  • 11. University of Warsaw, Faculty of Mathematics, Informatics, and Mechanics
  • 12. Boehringer Ingelheim
  • 13. Seqera
  • 14. Stanford Cancer Institute
  • 15. Lamin

Description

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed

Added

  • Docker automatic build by @LucaMarconato in https://github.com/scverse/spatialdata/pull/841
  • Partial reading by @aeisenbarth in https://github.com/scverse/spatialdata/pull/765
  • Add warning (raster models) when large chunks are detected by @LucaMarconato in https://github.com/scverse/spatialdata/pull/874
  • allow filtering by ids by @melonora in https://github.com/scverse/spatialdata/pull/627

Changed

  • Replace pip with uv for test workflow by @LucaMarconato in https://github.com/scverse/spatialdata/pull/877
  • Specify NGFF 0.6-dev in output data by @LucaMarconato in https://github.com/scverse/spatialdata/pull/849

Fixed

  • Restore support for Python >=3.13 by @LucaMarconato in https://github.com/scverse/spatialdata/pull/840
  • bug with 3d data test in transform_to_data_extent by @LucaMarconato in https://github.com/scverse/spatialdata/pull/787
  • Fix JoinTypes.dict empty python 3.13 by @LucaMarconato in https://github.com/scverse/spatialdata/pull/853
  • Fix rechunk bug after spatial query by @LucaMarconato in https://github.com/scverse/spatialdata/pull/861
  • Fix bug join operation with non-annotating table by @LucaMarconato in https://github.com/scverse/spatialdata/pull/864
  • Fix bug custom region_key concatenate by @LucaMarconato in https://github.com/scverse/spatialdata/pull/871
  • fix suffix concatenate when each table annotates > 1 elements by @LucaMarconato in https://github.com/scverse/spatialdata/pull/873
  • fix max chunk size calculation by @LucaMarconato in https://github.com/scverse/spatialdata/pull/876
  • pin numba to earlierst version supporting python 3.10 by @giovp in https://github.com/scverse/spatialdata/pull/883
  • Resolve AnnData FutureWarnings The dtype argument is deprecated by @Zethson in https://github.com/scverse/spatialdata/pull/896

Full Changelog: https://github.com/scverse/spatialdata/compare/v0.3.0...v0.4.0

Files

scverse/spatialdata-v0.4.0.zip

Files (392.4 kB)

Name Size Download all
md5:c5a73f0d053948fc5faef95a919521c6
392.4 kB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/scverse/spatialdata/tree/v0.4.0 (URL)

Software

Repository URL
https://github.com/scverse/spatialdata