Published April 15, 2025
| Version v1
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Topologically Directed Simulations Reveal the Impact of Geometric Constraints on Knotted Proteins
Description
This repository contains code and data for the Kremer-Grest polymers and Growing Walk Model topological simulations from the paper "Topologically Directed Simulations Reveal the Impact of Geometric Constraints on Knotted Proteins". Knoto-ID is a crucial dependency for our computations. You can either compile it from source or download a pre-built executable from its GitHub repository
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