Published April 9, 2025
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An updated survey of molecular diversity in Madagascar's velvet geckos, genus Blaesodactylus, with description of a new species from the island's arid West
Authors/Creators
- 1. Zoologisches Institut, Technische Universität Braunschweig, Mendelssohnstr. 4, 38106 Braunschweig, Germany.
- 2. Zoologisches Institut, Technische Universität Braunschweig, Mendelssohnstr. 4, 38106 Braunschweig, Germany. & Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum national d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, 57 rue Cuvier, 75231 Paris cedex, France.
- 3. Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum national d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, 57 rue Cuvier, 75231 Paris cedex, France.
- 4. Mention Environnement, Université de l'Itasy, Faliarivo Ambohidanerana, 118 Soavinandriana Itasy, Madagascar. & School for International Training, VN 41A Bis Ankazolava Ambohitsoa, Antananarivo, 101 Madagascar.
- 5. Natural History Museum Denmark, University of Copenhagen, Universitetsparken 15, 2100, Copenhagen Ø, Denmark.
- 6. Hessisches Landesmuseum Darmstadt, Friedensplatz 1, 64283 Darmstadt, Germany.
- 7. Zoologische Staatssammlung München (ZSM-SNSB), Münchhausenstr. 21, 81247 München, Germany.
- 8. Mention Zoologie et Biodiversité Animale, Université d'Antananarivo, BP 906, Antananarivo, 101 Madagascar. & Association Vahatra, Lot V A 38 LBA Ter Ambohidempona Tsiadana, BP 3972, Antananarivo, 101 Madagascar.
Description
Vences, Miguel, Miralles, Aurelien, Ineich, Ivan, Rakotoarison, Andolalao, Glasenapp, Christian, Scherz, Mark D., Köhler, Jörn, Glaw, Frank, Raselimanana, Achille P. (2025): An updated survey of molecular diversity in Madagascar's velvet geckos, genus Blaesodactylus, with description of a new species from the island's arid West. Zootaxa 5620 (2): 230-254, DOI: 10.11646/zootaxa.5620.2.2, URL: https://doi.org/10.11646/zootaxa.5620.2.2
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Additional details
Identifiers
- URL
- https://www.checklistbank.org/dataset/309464
- LSID
- urn:lsid:zoobank.org:pub:EEEE2656-E891-4DD3-A30A-4CF07019F1D7
- LSID
- urn:lsid:plazi.org:pub:FFABAA7DFF89FF9DFFF6FFFA9B76FF96
- URL
- http://publication.plazi.org/id/FFABAA7DFF89FF9DFFF6FFFA9B76FF96
References
- Arevalo, E., Davis, S.K. & Sites, J.W.Jr. (1994) Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in Central Mexico. Systematic Biology, 43, 387-418. https://doi.org/10.1093/sysbio/43.3.387
- Avise, J.C. & Ball, R.M. (1990) Principles of genealogical concordance in species concepts and biological taxonomy. In: Futuyma, D. & Antonovics, J. (Eds.), Oxford Surveys in Evolutionary Biology. Oxford University Press, Oxford, pp. 45-67. https://doi.org/10.1073/pnas.94.15.7748
- Avise, J. & Wollenberg, K. (1997) Phylogenetics and the origin of species. Proceedings of the National Academy of Sciences of the United States of America, 94, 7748-7755. https://doi.org/10.1073/pnas.94.15.7748
- Bauer, A.M., Glaw, F., Gehring, P.-S. & Vences, M. (2011) New species of Blaesodactylus (Squamata: Gekkonidae) from Ankarafantsika National Park in north-western Madagascar. Zootaxa, 2942 (1), 57-68. https://doi.org/10.11646/zootaxa.2942.1.2
- Bauer, A.M., Scherz, M.D., Crottini, A., Ratsoavina, F.M. & Glaw, F. (2022) Gekkonidae, Geckos, Katsatsaka, TsaTsake. In: Goodman, S.M. (Ed.), The New Natural History of Madagascar. Princeton University Press, Princeton, New Jersey, pp. 1474-1479. https://doi.org/10.2307/j.ctv2ks6tbb.211
- Bell, J. (2008) A simple way to treat PCR products prior to sequencing using ExoSAP-IT. Biotechniques, 44, 834. https://doi.org/10.2144/000112890
- Bohme, W. & Meier, H. (1980) Revision der madagassischen Homopholis (Blaesodactylus)-Arten (Sauria: Gekkonidae). Senckenbergiana Biologica, 60, 303-315. [1979]
- Boulenger, G.A. (1896) Descriptions of new lizards from Madagascar. Annals and Magazine of Natural History, Series 6, 17, 444-446. https://doi.org/10.1080/00222939608680395
- Boumans, L., Vieites, D.R., Glaw, F. & Vences, M. (2007) Geographical patterns of deep mitochondrial differentiation in widespread Malagasy reptiles. Molecular Phylogenetics and Evolution, 45, 822-839. https://doi.org/10.1016/j.ympev.2007.05.028
- Bruford, M.W., Hanotte, O., Brookfield, J.F.Y. & Burke, T. (1992) Single-locus and multilocus DNA fingerprint. In: Hoelzel, A.R. (Ed.), Molecular Genetic Analysis of Populations: A Practical Approach. IRL Press, Oxford, pp. 225-270.
- Clement, M., Posada, D. & Crandall, K.A. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1659. https://doi.org/10.1046/j.1365-294x.2000.01020.x
- de Queiroz, K. (1998) The general lineage concept of species, species criteria, and the process of speciation. In: Howard, D.J. & Berlocher, S.H. (Eds.), Endless Forms. Species and Speciation. Oxford University Press, Oxford, pp. 49-89.
- de Queiroz, K. (2007) Species concepts and species delimitation. Systematic Biology, 56, 879-886. https://doi.org/10.1080/10635150701701083
- Dumeril, A.H.A. (1856) Description des reptiles nouveaux ou imparfaitement connus de la collection du Museum d'Histoire Naturelle et remarques sur la classification et les caracteres des reptiles. Archives du Museum d'Histoire Naturelle de Paris, 8, 438-588.
- Edler, D., Klein, J., Antonelli, A. & Silvestro, D. (2020) raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution, 12, 373-377. https://doi.org/10.1111/2041-210X.13512
- Gehring, P.S., Ratsoavina, F.M. & Vences, M. (2010) Filling the gaps - amphibian and reptile records from lowland rainforests in eastern Madagascar. Salamandra, 46, 214-234.
- Gehring, P.S., Siarabi, S., Scherz, M.D., Ratsoavina, F.M., Rakotoarison, A., Glaw, F. & Vences, M. (2018) Genetic differentiation and species status of the large-bodied leaf-tailed geckos Uroplatus fimbriatus and U. giganteus. Salamandra, 54, 132- 146.
- Glaw, F., Gehring, P.-S., Kohler, J., Franzen, M. & Vences, M. (2010) A new dwarf species of day gecko, genus Phelsuma, from the Ankarana pinnacle karst in northern Madagascar. Salamandra, 46, 83-92.
- Glaw, F., Kohler, J. & Vences, M. (2018) Three new species of nocturnal geckos of the Paroedura oviceps clade from xeric environments of Madagascar (Squamata: Gekkonidae). Zootaxa, 4433 (2), 305-324. https://doi.org/10.11646/zootaxa.4433.2.4
- Glaw, F., Rosler, H., Ineich, I., Gehring, P.-S., Kohler, J. & Vences, M. (2014) A new species of nocturnal gecko (Paroedura) from karstic limestone in northern Madagascar. Zoosystematics and Evolution, 90, 249-259. https://doi.org/10.3897/zse.90.8705
- Grandidier, A. (1867) Liste des reptiles nouveaux decouverts, en 1866, sur la cote sud-ouest de Madagascar. Revue et Magazine de Zoologie, Paris, Serie 2, 19, 232-234
- Greenbaum, E., Jackman, T. & Bauer, A.M. (2007) Homopholis and Blaesodactylus (Squamata: Gekkonidae) revisited: new insights from a molecular phylogeny. African Journal of Herpetology, 56, 101-114. https://doi.org/10.1080/21564574.2007.9635557
- Han, D., Zhou, K. & Bauer, A.M. (2004) Phylogenetic relationships among gekkotan lizards inferred from c-mos nuclear DNA sequences and a new classification of the Gekkota. Biological Journal of the Linnean Society, 83, 353-368. https://doi.org/10.1111/j.1095-8312.2004.00393.x
- Ikeuchi, I. & Mori, A. (2014) Natural history of a Madagascan gecko Blaesodactylus ambonihazo in a dry deciduous forest. Current Herpetology, 33, 161-170. https://doi.org/10.5358/hsj.33.161
- Ineich, I. & Bourgoin, T. (2016) Sex and food in a cave during daytime, a possible way to escape predators for the nocturnal Madagascar gekkonid Paroedura tanjaka Nussbaum & Raxworthy, 2000. Herpetology Notes, 9, 187-190.
- Ineich, I., Glaw, F. & Vences, M. (2016) A new species of Blaesodactylus (Squamata: Gekkonidae) from Tsingy limestone outcrops in Namoroka National Park, north-western Madagascar. Zootaxa, 4109 (5), 523-541. https://doi.org/10.11646/zootaxa.4109.5.2
- Jackman, T.R., Bauer, A.M., Greenbaum, E., Glaw, F. & Vences, M. (2008) Molecular phylogenetic relationships among species of the Mal-agasy-Comoran gecko genus Paroedura (Squamata: Gekkonidae). Molecular Phylogenetics and Evolution, 46, 74-81. https://doi.org/10.1016/j.ympev.2007.10.018
- Jenkins, R.K.B., Tognelli, M.F., Bowles, P., Cox, N., Brown, J.L., Chan, L.,Andreone, F., Andriamazava,A.,Andriantsimanarilafy, R.R., Anjeriniaina, M., Bora, P., Brady, L.D., Hantalalaina, E.F., Glaw, F., Griffiths, R.A., Hilton-Taylor, C., Hoffmann, M., Katariya, V., Rabibisoa, N.H., Rafanomezantsoa, J., Rakotomalala, D., Rakotondravony, H., Rakotondrazafy, N.A., Ralambonirainy, J., Ramanamanjato, J.B., Randriamahazo, H., Randrianantoandro,J.C., Randrianasolo, H.H., Randrianirina, J.E., Randrianizahana, H., Raselimanana, A.P., Rasolohery, A., Ratsoavina, F.M., Raxworthy, C.J., Robsomanitrandrasana, E., Rollande, F., Van Dijk, P.P., Yoder, A.D. & Vences, M. (2014) Extinction risks and the conservation of Madagascar's reptiles. PLoS One, 9 (8), e100173. https://doi.org/10.1371/journal.pone.0100173
- Jono, T., Bauer, A.M., Brennan, I. & Mori, A. (2015) New species of Blaesodactylus (Squamata: Gekkonidae) from Tsingy karstic outcrops in Ankarana National Park, northern Madagascar. Zootaxa, 3980 (3), 406-416. https://doi.org/10.11646/zootaxa.3980.3.4
- Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution, 30, 772-780. https://doi.org/10.1093/molbev/mst010
- Kocher, T.D., Thomas, W.K., Meyer, A., Edwards, S.V., Paabo, S., Villablanca, F.X. & Wilson, A.C. (1989) Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the USA, 86, 6196-6200. https://doi.org/10.1073/pnas.86.16.6196
- Kohler, J., Vences, M., Scherz, M.D. & Glaw, F. (2019) A new species of nocturnal gecko, genus Paroedura, from the karstic Tsingy de Bemaraha formation in western Madagascar. Salamandra, 55 (2), 73-81.
- Kremen, C., Cameron, A., Moilanen,A., Phillips, S., Thomas, C.D., Beentje, H., Dransfield, J., Fisher, B.L., Glaw, F., Good, T.C., Harper, G.J., Hijmans, R.J., Lees, D.C., Louis Jr. E., Nussbaum, R.A., Raxworthy, C.J., Razafimpahanana, A., Schatz, G.E., Vences, M., Vieites, D.R., Wright, P.C. & Zjhra, M.L. (2008) Aligning conservation priorities across taxa in Madagascar, with high-resolution planning tools. Science, 320, 222-226. https://doi.org/10.1126/science.1155193
- Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870-1874. https://doi.org/10.1093/molbev/msw054
- Lemme, I., Erbacher, M., Kaffenberger, N., Vences, M. & Kohler, J. (2013) Molecules and morphology suggest cryptic species diversity and an overall complex taxonomy of fish scale geckos, genus Geckolepis. Organisms Diversity and Evolution, 13, 87-95. https://doi.org/10.1007/s13127-012-0098-y
- Moat, J. & Smith, P. (2007) Atlas of the Vegetation of Madagascar. Royal Botanic Gardens, Kew Richmond, 124 pp.
- Miralles, A., Puillandre, N. Vences, M. (2024) Chapter 4. DNA barcoding in species delimitation: from genetic distances to integrative taxonomy. In: de Salle, R. (Ed.), DNA barcodes: methods and protocols. Springer protocol series. Humana, New York, New York, pp. 77-104. https://doi.org/10.1007/978-1-0716-3581-0_4
- Mohan, A.V., Gehring, P.S., Scherz, M.D., Glaw, F., Ratsoavina, F.M. & Vences, M. (2019) Comparative phylogeography and patterns of deep genetic differentiation of two gecko species, Paroedura gracilis and Phelsuma guttata, across northeastern Madagascar. Salamandra, 55, 211-220.
- Nachman, M.W., Beckman, E.J., Bowie, R.C., Cicero, C., Conroy, C.J., Dudley, R., Hayes, T.B., Koo, M.S., Lacey, E.A., Martin, C.H., McGuire, J.A., Patton, J.L., Spencer, C.L., Tarvin, R.D., Wake, M.H., Wang, I.J., Achmadi, A., Alvarez-Castaneda, S.T., Andersen, M.J., Arroyave, J., Austin, C.C., Barker, F.K., Barrow, L.N., Barrowclough, G.F., Bates, J., Bauer, A.M., Bell, K.C., Bell, R.C., Bronson, A.W., Brown, R.M., Burbrink, F.T., Burns, K.J., Cadena, C.D., Cannatella, D.C., Castoe, T.A., Chakrabarty, P., Colella, J.P., Cook, J.A., Cracraft, J.L., Davis, D.R., Davis Rabosky, A.R., D'Elia, G., Dumbacher, J.P., Dunnum, J.L., Edwards, S.V., Esselstyn, J.A., Faivovich, J., Fjeldsa, J., Flores-Villela, O.A., Ford, K, Fuchs, J., Fujita, M.K., Good, J.M., Greenbaum, E., Greene, H.W., Hackett, S., Hamidy, A., Hanken, J., Haryoko, T., Hawkins, M.T., Heaney, L.R., Hillis, D.M., Hollingsworth, B.D., Hornsby, A.D., Hosner, P.A., Irham, M., Jansa, S., Jimenez, R.A., Joseph, L., Kirchman, J.J., LaDuc, T.J., Leache, A.D., Lessa, E.P., Lopez-Fernandez, H., Mason, N.A., McCormack, J.E., McMahan, C.D., Moyle, R.G., Ojeda, R.A., Olson, L.E., Kin Onn, C., Parenti, L.R., Parra-Olea, G., Patterson, B.D., Pauly, G.B., Pavan, S.E., Peterson, A.T., Poe, S., Rabosky, D.L., Raxworthy, C.J., Reddy, S., Rico-Guevara, A., Riyanto, A., Rocha, L.A., Ron, S.R., Rovito, S.M., Rowe, K.C., Rowley, J., Ruane, S., Salazar-Valenzuela, D., Shultz, A.J., Sidlauskas, B., Sikes, D.S., Simmons, N.B., Stiassny, M.L.J., Streicher, J.W., Stuart, B.L., Summers, A.P., Tavera, J., Teta, P., Thompson, C.W., Timm, R.M., Torres-Carvajal, O., Voelker, G., Voss, R.S., Winker, K., Witt, C., Wommack, E.A. & Zink, R.M. (2023) Specimen collection is essential for modern science. PLoS Biology, 21, e3002318. https://doi.org/10.1371/journal.pbio.3002318.
- Padial, J.M., Miralles, A., De la Riva, I. & Vences, M. (2010) The integrative future of taxonomy. Frontiers in Zoology, 7, e16. https://doi.org/10.1186/1742-9994-7-16
- Palumbi, S.R., Martin, A., Romano, S., McMillan, W.O., Stice, L. & Grabowski, G. (1991) The Simple Fool's Guide to PCR. Version 2.0. Privately published, University of Hawaii, Honolulu, 45 pp.
- Penny, S.G., Crottini, A., Andreone, F., Bellati, A., Rakotozafy, L.M.S, Holderied, M.W., Schwitzer, C. & Rosa, G.M. (2017) Combining old and new evidence to increase the known biodiversity value of the Sahamalaza Peninsula, Northwest Madagascar. Contributions to Zoology, 86 (4) 273-296. https://doi.org/10.1163/18759866-08604002
- Rakotoarimalala, F. & Raselimanana, A.P. (2023) Apercu global de la tendance de la structure de la communaute herpetofaunique le long du gradient altitudinal du versant Est du Parc National de Marojejy au cours de ces 25 dernieres annees. In: Goodman, S.M. & Raherilalao, M.J. (Eds.), A floral and faunal inventory of the Parc National de Marojejy: Altitudinal gradient and temporal variation. Malagasy Nature, 17, pp. 165-186.
- Raselimanana, A.P. (2008) Herpetofaune des forets seches malgaches. Malagasy Nature, 1, 46-75.
- Ratsoavina, F.M., Scherz, M.D., Tolley, K.A., Raselimanana, A.P., Glaw, F. & Vences, M. (2019) A new species of Uroplatus (Gekkonidae) from Ankarana National Park, Madagascar, of remarkably high genetic divergence. Zootaxa, 4683 (1), 84- 96. https://doi.org/10.11646/zootaxa.4683.1.4
- Rocha, S., Vences, M., Glaw, F., Posada, D. & Harris, D.J. (2009) Multigene phylogeny of Malagasy day geckos of the genus Phelsuma. Molecular Phylogenetics and Evolution, 52, 530-537. https://doi.org/10.1016/j.ympev.2009.03.032
- Russell, A.P. (1978) The status of the lizard genera Blaesodactylus Boettger and Homopholis Boulenger (Reptilia: Gekkonidae). Copeia, 1978, 25-29. https://doi.org/10.2307/1443817
- Scherz, M.D., Daza, J.D., Kohler, J., Vences, M. & Glaw, F. (2017) Off the scale: a new species of fish-scale gecko (Squamata: Gekkonidae: Geckolepis) with exceptionally large scales. PeerJ, 5, e2955. https://doi.org/10.7717/peerj.2955
- Schneider, C.A., Rasband, W.S. & Eliceiri, K.W. (2012) NIH Image to ImageJ: 25 years of image analysis. Nature Methods, 9, 671-675. https://doi.org/10.1038/nmeth.2089
- Stephens, M., Smith, N.J. & Donnelly, P. (2001) A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68, 978-989. https://doi.org/10.1086/319501
- Templeton, A.R., Crandall, K.A. & Sing, C.F. (1992) A cladistic analysis of phenotypic association with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, 619-635. https://doi.org/10.1093/genetics/132.2.619
- Uetz, P., Freed, P., Aguilar, R., Reyes, F., Kudera, J. & Hosek, J. (Eds.) (2024) The Reptile Database. Available from: http://www. reptile-database.org (accessed May 15 August 2024)
- Vences, M., Miralles, A., Brouillet, S., Ducasse, J., Fedosov, A., Kharchev, V., Kostadinov, I., Kumari, S., Patmanidis, S., Scherz, M.D., Puillandre, N. & Renner, S.S. (2021) iTaxoTools 0.1: Kickstarting a specimen-based software toolkit for taxonomists. Megataxa, 6 (2), 77-92. https://doi.org/10.11646/megataxa.6.2.1
- Vences, M., Miralles, A. & Dufresnes, C. (2024b) Next-generation species delimitation and taxonomy: implications for biogeography. Journal of Biogeography, 51 (9), 1709-1722. https://doi.org/10.1111/jbi.14807
- Vences, M., Multzsch, M., Gippner, S., Miralles, A., Crottini, A., Gehring, P.-S., Rakotoarison, A., Ratsoavina, F.M., Glaw, F. & Scherz, M.D. (2022b) Integrative revision of the Lygodactylus madagascariensis group reveals an unexpected diversity of little brown geckos in Madagascar's rainforest. Zootaxa, 5179 (1), 1-61. https://doi.org/10.11646/zootaxa.5179.1.1
- Vences, M., Patmanidis, S., Kharchev, V. & Renner, S.S. (2022a) Concatenator, a user-friendly program to concatenate DNA sequences, implementing graphical user interfaces for MAFFT and FastTree. Bioinformatics Advances, 2, vbac050. https://doi.org/10.1093/bioadv/vbac050
- Vences, M., Patmanidis, S., Schmidt, J.-C., Matschiner, M., Miralles, A. & Renner, S.S. (2024a) Hapsolutely: a user-friendly tool integrating haplotype phasing, network construction and haploweb calculation. Bioinformatics Advances, vbae083. https://doi.org/10.1093/bioadv/vbae083