CCR Collaborative Bioinformatics Resource [CCBR]

There is a newer version of the record available.

Published April 14, 2025 | Version v0.2.3
Software Open

CCBR Tools: Utilities for CCBR Bioinformatics Software

Authors/Creators

  • 1. Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA

Description

  • Output ccbrpipeliner module version in spooker metadata. (#43, @kelly-sovacool)
  • Spooker now correctly outputs metadata as a yaml file. (#43, @kelly-sovacool)
  • Improvements to ccbr_tools.pipeline.nextflow.run: (#44, @kelly-sovacool)
    • Use -resume by default and turn it off with --forceall.
    • Use --output option.
    • Run -preview before launching the pipeline with slurm.
    • When running on biowulf, try adding spooker to the PATH if it's not available.

Notes

Please cite CCBR Tools as below

Files

CCBR/Tools-v0.2.3.zip

Files (3.5 MB)

Name Size Download all
md5:71c519c206261037ef79579fc0e149c7
3.5 MB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/CCBR/Tools/tree/v0.2.3 (URL)

Software

Repository URL
https://github.com/CCBR/Tools