nf-core

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Published April 23, 2024 | Version 4.0
Software Open

nf-core/airrflow: [4.0] - 2024-04-23 Ascendio

Authors/Creators

  • 1. Boehringer Ingelheim
  • 2. oNKo-innate
  • 3. QBiC
  • 4. @seqeralabs
  • 5. Seqera
  • 6. Tgen
  • 7. Robert Bosch GmbH

Description

Added

  • #319 Added AIRR compliance badge

Fixed

  • #319 Fix test full profile and nebnext_umi_tcr profile.
  • #321 Label Dowser tips by isotype instead of c_call by default.
  • #322 Use RAxML as the default builder for dowser. Skip lineage trees by default.

Dependencies

| Dependency | Old version | New version | | ---------- | ----------- | ----------- | | enchantr | 0.1.11 | 0.1.14 |

Deprecated parameters

  • --skip_lineage_trees is now deprecated in favor of --lineage_trees. Lineage trees are skipped by default.
  • --igphyml parameter is deprecated in favor of --lineage_tree_exec. All lineage tree building software part of Dowser are now supported.
  • --igblast_base is deprecated in favor of --reference_igblast.
  • --imgtdb_base is depracated in favor of --reference_fasta.

Files

nf-core/airrflow-4.0.zip

Files (2.5 MB)

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md5:8528d3b5677a29019b5e883440e7c2c5
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/airrflow/tree/4.0 (URL)

Software

Repository URL
https://github.com/nf-core/airrflow