Published August 16, 2018
| Version v1
Dataset
Open
Table 1 in Chemical and genomic diversity of six Lonicera species occurring in Korea
Authors/Creators
- 1. College of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul, 08826, Republic of Korea & Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea
- 2. Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea
- 3. College of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul, 08826, Republic of Korea
- 4. Medicinal Plant Garden, College of Pharmacy, Seoul National University, Koyang, 12045, Republic of Korea & College of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul, 08826, Republic of Korea & Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea
Description
Table 1 Statistics of WGS and assembly summary for six Lonicera species.
| Feature | L. insularis | L. sachalinensis | L. praeflorens | L. maackii | L. vesicaria | L. japonica |
|---|---|---|---|---|---|---|
| Sequencing information | ||||||
| No. of raw read | 4,941,334 | 4,764,738 | 4,342,742 | 4,920,926 | 5,596,064 | 6,308,194 |
| No. of trimmed read | 4,662,540 | 4,339,126 | 4,024,338 | 4,640,648 | 4,712,150 | 5,029,201 |
| No. of trimmed bases | 1,211,552,506 | 1,098,408,065 | 1,040,146,882 | 1,188,483,775 | 1,164,886,321 | 1,178,414,508 |
| Chloroplast genome | ||||||
| Average read depth | 634.83 | 214.83 | 165.39 | 784.00 | 134.00 | 668.84 |
| Genome size (bp) | 155,124 | 155,123 | 154,892 | 155,318 | 155,182 | 155,060 |
| Large single copy | 88,230 | 88,229 | 88,353 | 89,202 | 89,096 | 88,853 |
| Small single copy | 18,774 | 18,774 | 18,929 | 18,680 | 18,612 | 18,653 |
| Inverted repeat | 24,060 | 24,060 | 23,805 | 23,718 | 23,737 | 23,777 |
| Number of genes | 114 | 114 | 114 | 114 | 113 | 109 |
| Protein-coding genes | 80 | 80 | 80 | 80 | 79 | 77 |
| Structure RNAs | 34 | 34 | 34 | 34 | 34 | 32 |
| GC contents (%) | 38.35 | 38.34 | 38.31 | 38.47 | 38.39 | 38.59 |
| GenBank acc. no. | MH028739 | MH028742 | MH028740 | MH028741 | MH028743 | MH028738 |
Notes
Published as part of Kang, Kyo Bin, Kang, Shin-Jae, Kim, Mi Song, Lee, Dong Young, Han, Sang Il, Kim, Tae Bum, Park, Jee Young, Kim, Jinwoong, Yang, Tae-Jin & Sung, Sang Hyun, 2018, Chemical and genomic diversity of six Lonicera species occurring in Korea, pp. 128 in Phytochemistry 155 on page 128, DOI: 10.1016/j.phytochem.2018.07.012, http://zenodo.org/record/10484355
Files
Files
(2.7 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:2c0556ad24d2906759c1d029e22e86b5
|
2.7 kB | Download |
System files
(11.2 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:72145ff46a176abf4292fae9877462aa
|
11.2 kB | Download |